Commits for jnavarr5

v354_preview2 to v354_base (2017-08-18 to 2017-08-28) v354

42f9d14e7e73d38f6c160d7fb383675fe05d0059 Wed Aug 23 08:59:39 2017 -0700

• Adding an apostrophe to tissues. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 1, context: html, text, full: html, text

61bdb5b78a5f8afeb9e6c453f43486a9b2453607 Wed Aug 23 09:26:07 2017 -0700

• Making the HTML page conform to our guidelines, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 33, context: html, text, full: html, text

4beeeb3a936414b2424ed330df7c0caf96823d3f Wed Aug 23 09:34:54 2017 -0700

• Fixing capitalization issue with 'GTEX'. Rewording a sentence. Italicizing our tool names. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 8, context: html, text, full: html, text

79b9db77a7470efcb4e48bf026883c3ad4492182 Wed Aug 23 09:53:53 2017 -0700

• Adding target='_blank' to a couple links. Refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 7, context: html, text, full: html, text

68cb4ee59f3003202887b53f048f040ce6d1b4c8 Wed Aug 23 10:03:56 2017 -0700

• Adding target='_blank' to a few links. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 12, context: html, text, full: html, text

8aac04034cafcf051e4b737235702cfc2f63529f Wed Aug 23 10:17:41 2017 -0700

• Making this html page conform to our HTML guidelines, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 38, context: html, text, full: html, text

53f905275d3a104851b2006c709622586c0c8fba Wed Aug 23 10:23:54 2017 -0700

• Adding a missing paragraph tag, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 2, context: html, text, full: html, text

7743ee95093647b34540ee8bf844e9198b64f3b7 Wed Aug 23 10:29:10 2017 -0700

• Fixing the barchar image. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 2, context: html, text, full: html, text

8e451222034b582283200a243a1719b467f873ab Wed Aug 23 10:36:30 2017 -0700

• Fixing the barchart image on the Gene Expression html page, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 4, context: html, text, full: html, text

6b02a27bd312559b5da88edebbb1a3a91df4131d Wed Aug 23 10:53:28 2017 -0700

• Fixing a capitalization issue with 'GTEX'. Rewording a few sentences. Italicizing our tools. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 10, context: html, text, full: html, text

dbd2b91fc6476240779971c45f42fbef4d4e8ed0 Wed Aug 23 10:55:19 2017 -0700

• Replacing a comma with a semicolon. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 1, context: html, text, full: html, text

e090a5710a29dd83f910a6a61c519c691796ec1a Wed Aug 23 11:23:59 2017 -0700

• Adding target='_blank' to a few links. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaTranscExpr.html - lines changed 12, context: html, text, full: html, text

f5e8e08b0d0083e33fdd001c25b2c8603d8c940c Wed Aug 23 11:37:04 2017 -0700

• Making this HTML page conform to our guidelines, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaTranscExpr.html - lines changed 31, context: html, text, full: html, text

215df0a1711faf5de7cc884dcb6b4a4f5d5443e2 Wed Aug 23 12:05:19 2017 -0700

• Fixing a captialization issue with 'GTEX'. Rewording a few sentences. Italicizing our tool names. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaTranscExpr.html - lines changed 16, context: html, text, full: html, text

2beb78816e018aa05a456042ce52fa32d2c61f2c Wed Aug 23 16:01:35 2017 -0700

• Removing the alpha,beta,public release tag now that the track is on the RR, CR #20013
  • src/hg/makeDb/trackDb/criGri/criGri1/trackDb.ra - lines changed 1, context: html, text, full: html, text

53e7d25e55e63337ef4a78f50885a2e7e8e466e0 Thu Aug 24 14:46:10 2017 -0700

• Rewording a few sentences as per code review, CR#20013
  • src/hg/makeDb/trackDb/criGri/criGri1/crispr.html - lines changed 4, context: html, text, full: html, text

c54d49e381445c5cd1371cb52bd5622ebde2eb5e Thu Aug 24 15:40:06 2017 -0700

• Adding a maxItems limit for the tcga tracks, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/barCharts.ra - lines changed 2, context: html, text, full: html, text

7be4eafa4c0e02c8e54e93f9bbaf40c09736461d Thu Aug 24 16:54:40 2017 -0700

• Adding the beta release tag, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/barCharts.ra - lines changed 3, context: html, text, full: html, text

30c4730ea9c3e38988d5dd836515ec3fc37e6ff6 Fri Aug 25 09:34:04 2017 -0700

• Updating links for ce2 from the broken link report, no redmine
  • src/hg/makeDb/trackDb/worm/ce2/picTar.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/est.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/intronEst.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/mrna.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/refGene.html - lines changed 7, context: html, text, full: html, text

c1be3b878064622c6ffbe4654e7381c49241ec64 Fri Aug 25 09:38:55 2017 -0700

• Updating redirected links on the augustus page, no redmine
  • src/hg/makeDb/trackDb/augustusGene.html - lines changed 4, context: html, text, full: html, text

3fcb588d0dfc1ef6bbc9b02cc57da1b04b854061 Fri Aug 25 11:03:29 2017 -0700

• Updating links found on the broken link report, no redmine
  • src/hg/makeDb/trackDb/blatFr1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/geneid.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/miRNA.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/microsat.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/phastConsElements.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rnaCluster.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/simpleRepeat.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/twinscan.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenoRefGene.html - lines changed 9, context: html, text, full: html, text

a1ff095e828d2e29eae8f49aad3ccb538a7b01bc Fri Aug 25 11:08:44 2017 -0700

• Updating links found on the broken links report that are specific to ce2, no redmine
  • src/hg/makeDb/trackDb/worm/ce2/axtNetCb1.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/blastzCb1.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/c_briggsae_pwMaf.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/chainCb1.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/netCb1.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/wabaCbr.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainSelf.html - lines changed 5, context: html, text, full: html, text

9b9312dd2f3f81e2a6a120f7c1436192842bd6e6 Fri Aug 25 11:41:38 2017 -0700

• Removing the <p> tag to recombine two paragraphs to match the styling on the GTEx tracks, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/tcgaTranscExpr.html - lines changed 6, context: html, text, full: html, text

d260bb93662c0b186f06e15b4d3768ff088039b0 Fri Aug 25 16:30:45 2017 -0700

• Adding a maxItems limit to prevent issues when switching between 'full', 'pack', etc. refs #19350
  • src/hg/makeDb/trackDb/human/hg38/barCharts.ra - lines changed 1, context: html, text, full: html, text