d09b392333a2f5d2f943f2f36dad4be0a477381e kate Thu Sep 14 13:55:37 2017 -0700 Add pvalue and TSS distance for each eQTL. Input from Casey Brown, U Penn. refs #15646 diff --git src/hg/hgTracks/gtexEqtlClusterTrack.c src/hg/hgTracks/gtexEqtlClusterTrack.c index e4dac7f..5073871 100644 --- src/hg/hgTracks/gtexEqtlClusterTrack.c +++ src/hg/hgTracks/gtexEqtlClusterTrack.c @@ -173,31 +173,31 @@ // filter by gene via SQL safef(cartVar, sizeof cartVar, "%s.%s", track->track, GTEX_EQTL_GENE); char *gene = cartNonemptyString(cart, cartVar); char *where = NULL; if (gene) { struct dyString *ds = dyStringNew(0); sqlDyStringPrintfFrag(ds, "%s = '%s'", GTEX_EQTL_GENE_FIELD, gene); where = dyStringCannibalize(&ds); isFiltered = TRUE; } bedLoadItemWhere(track, track->table, where, (ItemLoader)loadOne); // more filtering safef(cartVar, sizeof cartVar, "%s.%s", track->track, GTEX_EQTL_EFFECT); -extras->minEffect = fabs(cartUsualDouble(cart, cartVar, GTEX_EFFECT_MIN_DEFAULT)); +extras->minEffect = fabs(cartUsualDouble(cart, cartVar, GTEX_EQTL_EFFECT_DEFAULT)); safef(cartVar, sizeof cartVar, "%s.%s", track->track, GTEX_EQTL_PROBABILITY); extras->minProb = cartUsualDouble(cart, cartVar, GTEX_EQTL_PROBABILITY_DEFAULT); boolean hasTissueFilter = filterTissuesFromCart(track, extras); if (hasTissueFilter || extras->minEffect != 0.0 || extras->minProb != 0.0) { isFiltered = TRUE; filterItems(track, eqtlIncludeFilter, "include"); } if (isFiltered) labelTrackAsFiltered(track); } static char *gtexEqtlClusterItemName(struct track *track, void *item) /* Left label is gene name */ {