Commits for max

v355_preview2 to v355_base (2017-09-11 to 2017-09-18) v355

69149ba83d12c004221bade0c763cbb2531e2f6e Tue Sep 12 10:28:55 2017 -0700

• moving the cluster name from HgAutomate to a separate tiny text file, so it's easier to use from bash.
  • src/hg/utils/automation/HgAutomate.pm - lines changed 22, context: html, text, full: html, text
  • src/hg/utils/automation/cluster.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/makeUniProtPsl.sh - lines changed 59, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/mapUniprot_doBlast - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/uniprotMutations/makeUniProtToHg.sh - lines changed 59, context: html, text, full: html, text
  • src/hg/utils/uniprotMutations/mapUniprot_doBlast - lines changed 18, context: html, text, full: html, text
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text

2220c7cd0175bc25a18d8ee38c7f9ae7487e3c60 Fri Sep 15 17:33:54 2017 -0700

• Major rewrite of the UniProt pipeline, many changes, refs #19351
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/README.txt - lines changed 44, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/bed12UniProtAnnot.as - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/doUniprot - lines changed 799, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/makefile - lines changed 2, context: html, text, full: html, text

f95f2a892de717c11a45f0600e9172cd1517d6f1 Fri Sep 15 17:38:47 2017 -0700

• trackDb changes for uniprot track, refs #19351
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.uniprot.ra - lines changed 131, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/uniprot.html - lines changed 108, context: html, text, full: html, text

b5ee047d7e951f39d1d2acd48df79febce07ef52 Fri Sep 15 17:40:25 2017 -0700

• fixing missing line in last commit
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text

8917ca0ff9a16f697d30b6b54effbd00fe112f9e Fri Sep 15 23:27:49 2017 -0700

• more uniprot changes, #19351
  • src/hg/utils/otto/uniprot/doUniprot - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/uniprotLift - lines changed 480, context: html, text, full: html, text

8a9f85529515309e935064aa2d53421978687dd7 Fri Sep 15 23:29:29 2017 -0700

• making snpedia a composite with two subtracks, refs #19811
  • src/hg/makeDb/doc/hg38/snpedia.txt - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/bed4Note.as - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/makeAll.py - lines changed 72, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 28, context: html, text, full: html, text