Commits for max

v355_preview to v355_preview2 (2017-09-04 to 2017-09-11) v355

0e029fa9d8deb0b20ba6cd85a43844698aa631e0 Mon Jul 24 01:08:01 2017 -0400

• major changes to the uniprot track: splitting by annotation into more subtracks, reorg of the code so it can handle that many files, getting ready for ottomization and multi-org running. refs #19351
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/bed12UniProtAnnot.as - lines changed 21, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/bed12UniProtMut.as - lines changed 24, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/uniprotLift - lines changed 474, context: html, text, full: html, text
  • src/utils/uniprotLift - lines changed 442, context: html, text, full: html, text

723a3ed5b1fe1254bbbab0f762a9e9c416b33678 Tue Sep 5 17:34:47 2017 -0700

• another step towards an automated uniprot pipeline
  • src/hg/utils/otto/uniprot/README.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/utils/otto/uniprot/uniprotLift - lines changed 20, context: html, text, full: html, text

119930f9bf7b08a75efc8424cc06553444cda345 Wed Sep 6 11:41:12 2017 -0700

• short term fix for spAnnot duplicate track entry
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 35, context: html, text, full: html, text

65a1b82250c63386c904daa3d6de40afb2e102cb Wed Sep 6 12:34:44 2017 -0700

• fixing trackDb again, last commit was entirely wrong
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 177, context: html, text, full: html, text

7d7906dc8876134f5084b7a96117b01b21d739be Wed Sep 6 16:32:03 2017 -0700

• adding snpedia makedoc, all.joiner and all make scripts, refs #19811
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/snpedia.txt - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/download.py - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/downloadHtml.py - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/filterPages.py - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/getPos.py - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/makeBed.py - lines changed 103, context: html, text, full: html, text
  • src/hg/makeDb/scripts/snpedia/snpediaHtml.sql - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 9, context: html, text, full: html, text

2320531bfc19dfbef5dca9f55919cb40838626f8 Wed Sep 6 17:04:51 2017 -0700

• fixing up snpedia maker, refs #19811
  • src/hg/makeDb/scripts/snpedia/makeBed.py - lines changed 12, context: html, text, full: html, text

92c36154e4ab662b0b9b228c7aeb695d21526975 Thu Sep 7 11:22:26 2017 -0700

• removing duplicated .as files, refs #19351
  • src/hg/utils/uniprotMutations/bed12UniProtAnnot.as - lines changed 21, context: html, text, full: html, text
  • src/hg/utils/uniprotMutations/bed12UniProtMut.as - lines changed 24, context: html, text, full: html, text