ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e
kate
  Wed Oct 4 16:48:16 2017 -0700
Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646

diff --git src/hg/inc/gtexEqtlCluster.h src/hg/inc/gtexEqtlCluster.h
index f3d6f16..8d5cac0 100644
--- src/hg/inc/gtexEqtlCluster.h
+++ src/hg/inc/gtexEqtlCluster.h
@@ -13,31 +13,31 @@
 struct gtexEqtlCluster
 /* BED5+ of eQTLs (variants affecting gene expression) with a target (gene or tissue), and lists of secondary targets (e.g. tissues or genes) */
     {
     struct gtexEqtlCluster *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of variant (rsID or GTEx identifier if none) */
     unsigned score;	/* Score from 0-1000 */
     char *target;	/* Name of target (gene or tissue) */
     int distance;	/* Distance from TSS */
     unsigned expCount;	/* Number of experiment values */
     char **expNames;	/* Comma separated list of experiment names (e.g. tissue or gene) */
     float *expScores;	/* Comma separated list of effect size values */
     float *expPvals;	/* Comma separated list of -log10 transformed p-values */
-    float *expProbs;	/* Comma separated list of probability variant is in causal set */
+    float *expProbs;	/* Comma separated list of probability variant is causal */
     };
 
 struct gtexEqtlCluster *gtexEqtlClusterLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all gtexEqtlCluster from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gtexEqtlClusterFreeList(). */
 
 void gtexEqtlClusterSaveToDb(struct sqlConnection *conn, struct gtexEqtlCluster *el, char *tableName, int updateSize);
 /* Save gtexEqtlCluster as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. This function automatically escapes quoted strings for mysql. */