5bdc0c1e3a2e6a4bccc42597fd123ef594a634ce kate Thu Oct 5 14:55:00 2017 -0700 Fix 95% set definition again, as per Farhad Hormozdiari (author of CAVIAR). refs #15646 diff --git src/hg/lib/gtexEqtl.as src/hg/lib/gtexEqtl.as index 85a1883..a053801 100644 --- src/hg/lib/gtexEqtl.as +++ src/hg/lib/gtexEqtl.as @@ -3,17 +3,17 @@ ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Variant/gene pair" uint score; "Score from 0-1000 (highest probabiliity in cluster * 1000)" char[1] strand; "." uint thickStart; "Start position" uint thickEnd; "End position" uint reserved; "R,G,B color: red +effect, blue -effect. Bright for high, pale for lower (cutoff effectSize 2.0 RPKM)." string variant; "Variant (rsID or GTEx identifier if none)" string gene; "Target gene" int distance; "Distance from TSS" float effectSize; "Effect size (FPKM)" float pValue; "Nominal p-value" - float causalProb; "Probability variant is causal" + float causalProb; "Probability variant is in 95 percent credible set" )