ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e
kate
  Wed Oct 4 16:48:16 2017 -0700
Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646

diff --git src/hg/lib/gtexEqtl.as src/hg/lib/gtexEqtl.as
index 1058c39..85a1883 100644
--- src/hg/lib/gtexEqtl.as
+++ src/hg/lib/gtexEqtl.as
@@ -3,17 +3,17 @@
     (
     string chrom;      "Reference sequence chromosome or scaffold"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
     string name;       "Variant/gene pair"
     uint   score;      "Score from 0-1000 (highest probabiliity in cluster * 1000)"
     char[1] strand;    "."
     uint thickStart;   "Start position"
     uint thickEnd;     "End position"
     uint reserved;     "R,G,B color: red +effect, blue -effect. Bright for high, pale for lower (cutoff effectSize 2.0 RPKM)."
     string variant;    "Variant (rsID or GTEx identifier if none)"
     string gene;       "Target gene"
     int distance;      "Distance from TSS"
     float effectSize;  "Effect size (FPKM)"
     float pValue;      "Nominal p-value"
-    float causalProb;  "Probability variant is in 95% credible set"
+    float causalProb;  "Probability variant is causal"
     )