ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e
kate
  Wed Oct 4 16:48:16 2017 -0700
Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646

diff --git src/hg/lib/gtexEqtl.sql src/hg/lib/gtexEqtl.sql
index 2fa95a6..ab22e7b 100644
--- src/hg/lib/gtexEqtl.sql
+++ src/hg/lib/gtexEqtl.sql
@@ -8,22 +8,22 @@
     bin smallint not null,             # Bin number for browser speedup
     chrom varchar(255) not null,	# Reference sequence chromosome or scaffold
     chromStart int unsigned not null,	# Start position in chromosome
     chromEnd int unsigned not null,	# End position in chromosome
     name varchar(255) not null,	        # Variant/gene
     score int unsigned not null,	# Score from 0-1000 (highest probabiliity in cluster * 1000)
     strand char(1) not null,	# .
     thickStart int unsigned not null,	# Start position
     thickEnd int unsigned not null,	# End position
     reserved int unsigned not null,	# R,G,B color: red +effect, blue -effect. Bright for high, pale for lower (cutoff effectSize 2.0 RPKM).
     variant varchar(255) not null,	# Variant (rsID or GTEx identifier if none)
     gene varchar(255) not null,	# Target gene
     distance int not null,	# Distance from TSS
     effectSize float not null,	# Effect size (FPKM)
     pValue float not null,	# Nominal p-value
-    causalProb float not null,	# Probability variant is in 95% credible set
+    causalProb float not null,	# Probability variant is causal
               #Indices
     INDEX (chrom,bin),
     PRIMARY KEY (name),
     INDEX (gene),
     INDEX (variant)
 );