ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e kate Wed Oct 4 16:48:16 2017 -0700 Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646 diff --git src/hg/lib/gtexEqtlCluster.sql src/hg/lib/gtexEqtlCluster.sql index 2cbd530..bfe9ae7 100644 --- src/hg/lib/gtexEqtlCluster.sql +++ src/hg/lib/gtexEqtlCluster.sql @@ -5,20 +5,20 @@ #BED5+ of eQTLs (variants affecting gene expression) with a target (gene or tissue), and lists of secondary targets (e.g. tissues or genes) CREATE TABLE gtexEqtlCluster ( bin smallint not null, # Bin number for browser speedup chrom varchar(255) not null, # Reference sequence chromosome or scaffold chromStart int unsigned not null, # Start position in chromosome chromEnd int unsigned not null, # End position in chromosome name varchar(255) not null, # Name of variant (rsID or GTEx identifier if none) score int unsigned not null, # Score from 0-1000 target varchar(255) not null, # Name of target (gene or tissue) distance int not null, # Distance from TSS expCount int unsigned not null, # Number of experiment values expNames longblob not null, # Comma separated list of experiment names (e.g. tissue or gene) expScores longblob not null, # Comma separated list of effect size values expPvals longblob not null, # Comma separated list of -log10 transformed p-values - expProbs longblob not null, # Comma separated list of probability variant is in causal set + expProbs longblob not null, # Comma separated list of probabilities variant is causal #Indices INDEX chrom (chrom,bin), INDEX gene (target) );