ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e kate Wed Oct 4 16:48:16 2017 -0700 Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646 diff --git src/hg/lib/gtexEqtlCluster.as src/hg/lib/gtexEqtlCluster.as index 205b425..779cd66 100644 --- src/hg/lib/gtexEqtlCluster.as +++ src/hg/lib/gtexEqtlCluster.as @@ -1,16 +1,16 @@ table gtexEqtlCluster "BED5+ of eQTLs (variants affecting gene expression) with a target (gene or tissue), and lists of values related to combined factors (e.g. tissues or genes) ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of variant (rsID or GTEx identifier if none)" uint score; "Score from 0-1000" string target; "Name of target (gene or tissue) int distance; "Distance from TSS" uint expCount; "Number of experiment values" string[expCount] expNames; "Comma separated list of experiment names (e.g. tissue or gene)" float[expCount] expScores; "Comma separated list of effect size values" float[expCount] expPvals; "Comma separated list of -log10 transformed p-values" - float[expCount] expProbs; "Comma separated list of probability variant is in 95% credible set" + float[expCount] expProbs; "Comma separated list of probabilities variant is causal" )