dbf690a43c2a57d780e7f6327ca9246b54e7904a
kate
  Thu Oct 5 15:49:25 2017 -0700
Add v1 GTEx eQTL tracks. refs #15646

diff --git src/hg/lib/gtexEqtlTissue.as src/hg/lib/gtexEqtlTissue.as
new file mode 100644
index 0000000..a053801
--- /dev/null
+++ src/hg/lib/gtexEqtlTissue.as
@@ -0,0 +1,19 @@
+table gtexEqtl
+"BED 9+ of expression Quantitative Trait Loci (eQTL). These are variants affecting gene expression"
+    (
+    string chrom;      "Reference sequence chromosome or scaffold"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Variant/gene pair"
+    uint   score;      "Score from 0-1000 (highest probabiliity in cluster * 1000)"
+    char[1] strand;    "."
+    uint thickStart;   "Start position"
+    uint thickEnd;     "End position"
+    uint reserved;     "R,G,B color: red +effect, blue -effect. Bright for high, pale for lower (cutoff effectSize 2.0 RPKM)."
+    string variant;    "Variant (rsID or GTEx identifier if none)"
+    string gene;       "Target gene"
+    int distance;      "Distance from TSS"
+    float effectSize;  "Effect size (FPKM)"
+    float pValue;      "Nominal p-value"
+    float causalProb;  "Probability variant is in 95 percent credible set"
+    )