c20579fc7c537c1736650125c5d264357d2cfa78
angie
  Mon Sep 18 13:15:16 2017 -0700
Big search & replace: use https instead of http for NCBI URLs.  refs #17793

diff --git src/hg/hgTracks/menu.c src/hg/hgTracks/menu.c
index bb7d054..5bb7836 100644
--- src/hg/hgTracks/menu.c
+++ src/hg/hgTracks/menu.c
@@ -319,85 +319,85 @@
                         }
                     }
                 ctgPosFree(&ctgItem);   // the one we maybe used
                 }
             }
         else
             {
             printEnsemblAnchor(database, archive, chromName, winStart, winEnd, &links);
             }
         }
     }
 hFreeConn(&conn);
 
 if (sameString(database, "hg38"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "hg19"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&build=previous&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&build=previous&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "mm8"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=10090&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=10090&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "danRer2"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=7955&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=7955&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "galGal3"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9031&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9031&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "canFam2"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9615&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9615&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "rheMac2"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9544&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9544&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "panTro2"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9598&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9598&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "anoGam1"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=7165&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=7165&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (sameString(database, "bosTau6"))
     {
-    safef(buf, sizeof(buf), "http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9913&CHR=%s&BEG=%d&END=%d",
+    safef(buf, sizeof(buf), "https://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9913&CHR=%s&BEG=%d&END=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "NCBI", "ncbiLink", TRUE);
     }
 else if (startsWith("oryLat", database))
     {
     safef(buf, sizeof(buf), "http://medaka.utgenome.org/browser_ens_jump.php?revision=version1.0&chr=chromosome%s&start=%d&end=%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "UTGB", "medakaLink", TRUE);
     }
 else if (sameString(database, "cb3"))
     {
     safef(buf, sizeof(buf), "http://www.wormbase.org/db/seq/gbrowse/briggsae?name=%s:%d-%d",
           skipChr(chromName), winStart+1, winEnd);
     appendLink(&links, buf, "WormBase", "wormbaseLink", TRUE);
     }