447843e8a6310fa7a837c2f1790dea8a093e9cf7
angie
  Wed Sep 20 13:20:53 2017 -0700
NCBI RefSeq: link out to MGI IDs for mouse.  Use the human-specific hgnc column of ncbiRefSeqLink table.  In hgc, if contents of hgnc start with "MGI:" then label as MGI instead of HGNC.  In ncbiRefSeqOther bigBed, omit extra columns that have no values (like OMIM and HGNC for mouse, and MGI for human); auto-generate ncbiRefSeqOther.as accordingly.  refs #18997

diff --git src/hg/inc/ncbiRefSeqOther.as src/hg/inc/ncbiRefSeqOther.as
deleted file mode 100644
index cbea67e..0000000
--- src/hg/inc/ncbiRefSeqOther.as
+++ /dev/null
@@ -1,37 +0,0 @@
-table ncbiRefSeqOtherBb
-"Additional information for NCBI 'Other' annotation"
-    (
-    string chrom;      "Chromosome (or contig, scaffold, etc.)"
-    uint   chromStart; "Start position in chromosome"
-    uint   chromEnd;   "End position in chromosome"
-    string name;       "Name of item"
-    uint   score;      "Placeholder for BED format (score 0-1000)"
-    char[1] strand;    "+ or -"
-    uint thickStart;   "CDS start/end in chromosome if coding"
-    uint thickEnd;     "CDS start/end in chromosome if coding"
-    uint reserved;     "Placeholder for BED format (itemRgb)"
-    int blockCount;    "Number of alignment blocks"
-    int[blockCount] blockSizes; "Comma separated list of block sizes"
-    int[blockCount] chromStarts; "Block start positions relative to chromStart"
-
-    string gene;        "Gene name"
-    string GeneID;      "Entrez Gene"
-    string MIM;         "OMIM"
-    string HGNC;        "HGNC"
-    string miRBase;     "miRBase"
-    string description; "Description"
-    string Note;        "Note"
-    string exception;   "Exceptional properties"
-    string product;     "Gene product"
-    string geneSynonym; "Gene synonyms"
-    string modelEvidence;  "Supporting evidence for gene model"
-    string gbkey;       "Feature type"
-    string geneBiotype; "Gene biotype"
-    string pseudo;      "'true' if pseudogene"
-    string partial;     "'true' if partial"
-    string anticodon;   "Anticodon position within tRNA"
-    string codons;      "Number of codons in anticodon range"
-    string startRange;  "Start range on genome"
-    string endRange;    "End range on genome"
-    string ID;          "Unique ID in RefSeq GFF3"
-)