Commits for brianlee

v355_base to v356_preview (2017-09-18 to 2017-09-25) v356

6afccf59c3706803aad0db3727c4ab6c2da71767 Mon Sep 18 16:37:59 2017 -0700

• Updates to gbdDescriptions.html per code review input refs #20162
  • src/hg/htdocs/goldenPath/gbdDescriptions.html - lines changed 11, context: html, text, full: html, text

c21510d3b269ef91adb6a21e7aebec51f0c4e020 Tue Sep 19 09:33:13 2017 -0700

• Code review, removing 2nd below below the first below typo refs #20162
  • src/hg/htdocs/goldenPath/gbdDescriptions.html - lines changed 1, context: html, text, full: html, text

1265808dc88d2a6102ebd1939e8c45c470e4bd9c Fri Sep 22 11:27:44 2017 -0700

• Making some typo corrections refs #19695
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/augustusGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/iscaComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/iscaRetrospective.html - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubAugustusGene.pl - lines changed 1, context: html, text, full: html, text

136b50153ee5f40cc7e22c884a7b4e2c105a2ff0 Fri Sep 22 11:46:52 2017 -0700

• Adding a note about starting with dimX with dimensions (rather than dimA) refs #17916
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 4, context: html, text, full: html, text

d3f5844afcee67e9795d83b52c551832403c78b2 Fri Sep 22 13:23:23 2017 -0700

• Changing Genbank to GenBank in descriptions refs #19695
  • src/hg/makeDb/trackDb/anopheles/anoGam1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/apiMel1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/apiMel2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/armadillo/dasNov1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau6/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm2/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm3/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droAna1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droAna2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droEre1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droGri1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droPer1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droSec1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droSim1/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/cavPor3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/petMar1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/braFlo1/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/description.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/oryLat1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/oryLat2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/microbat/myoLuc2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/nemVec1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/panda/ailMel1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/oryCun1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/oryCun2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/seaHare/aplCal1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sheep/oviAri1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/ci1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/ci2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/gasAcu1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/tetNig2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wallaby/macEug1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wallaby/macEug2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeJap1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caePb1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caePb2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeRem2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeRem3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/cb1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/cb3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce10/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce6/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/priPac1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/taeGut1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer5/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer6/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer7/description.html - lines changed 2, context: html, text, full: html, text

4e9a6c441af43892ccc3f7fa7505e1f7db231e42 Fri Sep 22 13:52:11 2017 -0700

• Adding Genbank -> GenBank mouse/mm10/mm10Strains1 track mentioned in refs #19695
  • src/hg/makeDb/trackDb/mouse/mm10/mm10Strains1.html - lines changed 1, context: html, text, full: html, text