File Changes for hiram

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v355_base to v356_preview (2017-09-18 to 2017-09-25) v356

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README
- lines changed 62, context: html, text, full: html, text
  e7316156b3e8d6ffef8ea8458d8ce564525ef556 Wed Sep 20 11:01:36 2017 -0700
  update to modern references, no redmine
src/browserbox/home/browser/.bashrc
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  b712da85a6d91395636950b4ca536c45a7210bdb Wed Sep 20 11:37:39 2017 -0700
  update bashrc to correspond to copy in the gBiB refs #20085
src/hg/htdocs/images/Neomonachus_schauinsland.jpg
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  5525d7e58701eca2d69ada0cf7123c83eb338dd4 Fri Sep 22 11:01:22 2017 -0700
  monk seal photo from WikiMedia photographer Kent Backman www.linkedin.com/in/kentbackman/ refs #19883
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  4daaad1bb612a146bc631114bc1492d9b9fec30f Fri Sep 22 13:34:41 2017 -0700
  incorrect name refs #19883
src/hg/htdocs/images/Neomonachus_schauinslandi.jpg
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  bd23a9046466058413322fac8fcdc0e60dfacf78 Fri Sep 22 13:33:18 2017 -0700
  monk seal photo from WikiMedia photographer Kent Backman www.linkedin.com/in/kentbackman/ refs #19883
src/hg/makeDb/doc/aotNan1/initialBuild.txt
- lines changed 722, context: html, text, full: html, text
  1c018c85acdb57da4dc0de0e08492b3a49bf4009 Thu Sep 21 11:50:23 2017 -0700
  beginning aotNan1 build refs #20196
src/hg/makeDb/doc/cerAty1/initialBuild.txt
- lines changed 723, context: html, text, full: html, text
  71cdfb912d2d7b3aee3716d1e78acbf3a7008a9b Mon Sep 25 08:53:43 2017 -0700
  running genbank refs #20199
src/hg/makeDb/doc/hg38/patchDescr.pl
- lines changed 5, context: html, text, full: html, text
  2e110fe5a09dfb564e509005ae318c05143ccced Tue Sep 19 07:13:31 2017 -0700
  finish off patch11 refs #19665
src/hg/makeDb/doc/manLeu1/initialBuild.txt
- lines changed 610, context: html, text, full: html, text
  0a3509b087146568c77b5deaaf6fc249c60e15a4 Thu Sep 21 08:08:14 2017 -0700
  starting manLeu1 - Drill browser build refs #20190
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  a539772a8bf646ff4b3eac817e414197af612991 Fri Sep 22 15:13:36 2017 -0700
  starting genbank refs #20190
src/hg/makeDb/doc/neoSch1/initialBuild.txt
- lines changed 775, context: html, text, full: html, text
  35dc94314b5be0d76f25cb3835b700925e2319a1 Fri Sep 22 20:54:57 2017 -0700
  running up windowMasker refs #19883
src/hg/makeDb/doc/susScr11/initialBuild.txt
- lines changed 4, context: html, text, full: html, text
  44751b0fddc43e8ca6f06f95edcdac79c3f52a52 Mon Sep 25 08:41:37 2017 -0700
  fix type in gold/assembly search rule refs #19859
src/hg/makeDb/genbank/etc/align.dbs
- lines changed 1, context: html, text, full: html, text
  e641c8c172997f54bda24924d0a09858ec312e52 Mon Sep 25 07:57:24 2017 -0700
  Added manLeu1 - Drill/Mandrillus leucophaeus refs #20190
src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 19, context: html, text, full: html, text
  433f3c60dc573cc99a22886b57a264e9ce46e7d0 Fri Sep 22 15:11:06 2017 -0700
  Added manLeu1/Drill; refs #20190
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  9fcdb5b539dcad7617a8a7c338540d91b08d63ab Sat Sep 23 20:39:07 2017 -0700
  missing refseq.mrna.native.pslCDnaFilter define for manLeu1 refs #20190
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  b8a9d228e44a206e312775c46eb48b364a2c5ffb Mon Sep 25 08:48:35 2017 -0700
  Added cerAty1/Sooty mangabey; refs #20199
src/hg/makeDb/genbank/etc/hgwdev.dbs
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  e641c8c172997f54bda24924d0a09858ec312e52 Mon Sep 25 07:57:24 2017 -0700
  Added manLeu1 - Drill/Mandrillus leucophaeus refs #20190
src/hg/makeDb/genbank/src/lib/gbGenome.c
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  433f3c60dc573cc99a22886b57a264e9ce46e7d0 Fri Sep 22 15:11:06 2017 -0700
  Added manLeu1/Drill; refs #20190
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  b8a9d228e44a206e312775c46eb48b364a2c5ffb Mon Sep 25 08:48:35 2017 -0700
  Added cerAty1/Sooty mangabey; refs #20199
src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
  928afef08260b2b368ebe2d58d73e1709ac1786a Thu Sep 21 08:06:21 2017 -0700
  adding manLeu1 to the build refs #20190
- lines changed 1, context: html, text, full: html, text
  0cd6e22ab1fbb6232bab2230fadc0f033cf8e6a3 Thu Sep 21 11:45:47 2017 -0700
  adding aotNan1 to the build refs #20196
- lines changed 1, context: html, text, full: html, text
  22487f142f2fe0a17f11a190b7eb54a94211ad66 Thu Sep 21 15:24:42 2017 -0700
  adding cerAty1 to the build refs #20199
- lines changed 1, context: html, text, full: html, text
  bef7bdcc92e6a77b486eadaa3c30e059efc82a7c Fri Sep 22 13:39:20 2017 -0700
  adding neoSch1 to the build refs #19883
src/hg/makeDb/trackDb/pig/susScr11/trackDb.ra
- lines changed 1, context: html, text, full: html, text
  c3ec05c2b4e033bbf8f59c6fc538da1d5a8aa0e6 Mon Sep 25 08:40:30 2017 -0700
  fixing search rule type for gold/assembly refs #19859
src/hg/makeDb/trackDb/primate/aotNan1/description.html
- lines changed 64, context: html, text, full: html, text
  0cd6e22ab1fbb6232bab2230fadc0f033cf8e6a3 Thu Sep 21 11:45:47 2017 -0700
  adding aotNan1 to the build refs #20196
src/hg/makeDb/trackDb/primate/aotNan1/gap.html
- lines changed 30, context: html, text, full: html, text
  0cd6e22ab1fbb6232bab2230fadc0f033cf8e6a3 Thu Sep 21 11:45:47 2017 -0700
  adding aotNan1 to the build refs #20196
src/hg/makeDb/trackDb/primate/aotNan1/gold.html
- lines changed 34, context: html, text, full: html, text
  0cd6e22ab1fbb6232bab2230fadc0f033cf8e6a3 Thu Sep 21 11:45:47 2017 -0700
  adding aotNan1 to the build refs #20196
src/hg/makeDb/trackDb/primate/aotNan1/trackDb.ra
- lines changed 8, context: html, text, full: html, text
  0cd6e22ab1fbb6232bab2230fadc0f033cf8e6a3 Thu Sep 21 11:45:47 2017 -0700
  adding aotNan1 to the build refs #20196
src/hg/makeDb/trackDb/primate/cerAty1/description.html
- lines changed 64, context: html, text, full: html, text
  22487f142f2fe0a17f11a190b7eb54a94211ad66 Thu Sep 21 15:24:42 2017 -0700
  adding cerAty1 to the build refs #20199
src/hg/makeDb/trackDb/primate/cerAty1/gap.html
- lines changed 30, context: html, text, full: html, text
  22487f142f2fe0a17f11a190b7eb54a94211ad66 Thu Sep 21 15:24:42 2017 -0700
  adding cerAty1 to the build refs #20199
src/hg/makeDb/trackDb/primate/cerAty1/gold.html
- lines changed 34, context: html, text, full: html, text
  22487f142f2fe0a17f11a190b7eb54a94211ad66 Thu Sep 21 15:24:42 2017 -0700
  adding cerAty1 to the build refs #20199
src/hg/makeDb/trackDb/primate/cerAty1/trackDb.ra
- lines changed 8, context: html, text, full: html, text
  22487f142f2fe0a17f11a190b7eb54a94211ad66 Thu Sep 21 15:24:42 2017 -0700
  adding cerAty1 to the build refs #20199
- lines changed 5, context: html, text, full: html, text
  67b054e4fe9b1951d4fd40f3528a174e5d5fef77 Mon Sep 25 08:30:10 2017 -0700
  add search rule for gold/assembly track refs #20199
src/hg/makeDb/trackDb/primate/manLeu1/description.html
- lines changed 64, context: html, text, full: html, text
  928afef08260b2b368ebe2d58d73e1709ac1786a Thu Sep 21 08:06:21 2017 -0700
  adding manLeu1 to the build refs #20190
- lines changed 5, context: html, text, full: html, text
  43e25af8f983da9fa4fd4ab787cde795676617f6 Thu Sep 21 08:12:06 2017 -0700
  change http to https for NCBI references refs #20190
src/hg/makeDb/trackDb/primate/manLeu1/gap.html
- lines changed 30, context: html, text, full: html, text
  928afef08260b2b368ebe2d58d73e1709ac1786a Thu Sep 21 08:06:21 2017 -0700
  adding manLeu1 to the build refs #20190
src/hg/makeDb/trackDb/primate/manLeu1/gold.html
- lines changed 34, context: html, text, full: html, text
  928afef08260b2b368ebe2d58d73e1709ac1786a Thu Sep 21 08:06:21 2017 -0700
  adding manLeu1 to the build refs #20190
src/hg/makeDb/trackDb/primate/manLeu1/trackDb.ra
- lines changed 8, context: html, text, full: html, text
  928afef08260b2b368ebe2d58d73e1709ac1786a Thu Sep 21 08:06:21 2017 -0700
  adding manLeu1 to the build refs #20190
- lines changed 5, context: html, text, full: html, text
  0d2da5f8248e501667cfeb9540084689e782d377 Fri Sep 22 14:54:16 2017 -0700
  add gold/assembly track search rule refs #20190
src/hg/makeDb/trackDb/seal/neoSch1/description.html
- lines changed 64, context: html, text, full: html, text
  bef7bdcc92e6a77b486eadaa3c30e059efc82a7c Fri Sep 22 13:39:20 2017 -0700
  adding neoSch1 to the build refs #19883
src/hg/makeDb/trackDb/seal/neoSch1/gap.html
- lines changed 29, context: html, text, full: html, text
  bef7bdcc92e6a77b486eadaa3c30e059efc82a7c Fri Sep 22 13:39:20 2017 -0700
  adding neoSch1 to the build refs #19883
src/hg/makeDb/trackDb/seal/neoSch1/gold.html
- lines changed 34, context: html, text, full: html, text
  bef7bdcc92e6a77b486eadaa3c30e059efc82a7c Fri Sep 22 13:39:20 2017 -0700
  adding neoSch1 to the build refs #19883
src/hg/makeDb/trackDb/seal/neoSch1/trackDb.ra
- lines changed 8, context: html, text, full: html, text
  bef7bdcc92e6a77b486eadaa3c30e059efc82a7c Fri Sep 22 13:39:20 2017 -0700
  adding neoSch1 to the build refs #19883
- lines changed 5, context: html, text, full: html, text
  4b52f836c3cc86f14e948fe8bd419324354f68b8 Sat Sep 23 15:54:13 2017 -0700
  adding gold/assembly track search rule refs #19883
src/hg/makeDb/trackDb/worm/ce6/trackDb.6way.ra
- lines changed 79, context: html, text, full: html, text
  8b8d716109b9f205a0777dae65d0389f45596db4 Tue Sep 19 09:42:14 2017 -0700
  fixup broken display of phastCons track refs #17373
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  35e1882e154b457f5c5524821f3c74cb3737b102 Tue Sep 19 22:39:26 2017 -0700
  correct label for phastCons track refs #17373
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  d0da77b9f8bec61ad1e193a5dd9640a95980274a Wed Sep 20 07:43:16 2017 -0700
  correct label for the species group refs #17373
src/hg/makeDb/trackDb/worm/ce6/trackDb.ra
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  8b8d716109b9f205a0777dae65d0389f45596db4 Tue Sep 19 09:42:14 2017 -0700
  fixup broken display of phastCons track refs #17373
src/hg/utils/automation/doSimpleRepeat.pl
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  89b677515c808670e0d4f3e07748d3b4897d11e4 Thu Sep 21 11:56:59 2017 -0700
  protect against starting without -trf409 argument refs #20196
src/hg/utils/automation/makeGenomeDb.pl
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  6d2b0d04a6899493c812c05ccc58e9347fbab29d Thu Sep 21 08:09:41 2017 -0700
  new trackDb dependency refs #20190
src/utils/qa/weeklybld/buildEnv.csh
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  1e171ee29ef889f3180ac01e5ab47a7a02158ad6 Mon Sep 25 10:11:49 2017 -0700
  v356 preview1 refs #20085

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