7e5af657adb6913058cf235f5fa724c0411a8106
kate
  Tue Sep 19 13:11:42 2017 -0700
Clarify comment on schema field. refs #15646

diff --git src/hg/lib/gtexEqtl.as src/hg/lib/gtexEqtl.as
new file mode 100644
index 0000000..864063b
--- /dev/null
+++ src/hg/lib/gtexEqtl.as
@@ -0,0 +1,18 @@
+table gtexEqtl
+"BED 9+ of eQTLs (variants affecting gene expression) with a target gene, effect size, p-value, and causal probability metric"
+    (
+    string chrom;      "Reference sequence chromosome or scaffold"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Name of variant (rsID or GTEx identifier if none)"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "."
+    uint thickStart;   "Start position"
+    uint thickEnd;     "End position"
+    uint reserved;     "R,G,B color: red for up-regulated, blue for down. Bright for high, grayed for low."
+    string gene;       "Name of target gene"
+    int distance;      "Distance from TSS"
+    float effectSize;  "Effect size (FPKM); regression slope calculated using quantile normalized expression"
+    float pValue;      "Nominal p-value"
+    float causalProb;  "Probability variant is in 95% credible set"
+    )