bc3cd36606b2cad0e7fa2b051856397b1c0fdb04
max
  Thu Sep 21 11:16:29 2017 -0700
fixing crispor external tools entry, must have been broken by some update they did

diff --git src/hg/hgTracks/extTools.ra src/hg/hgTracks/extTools.ra
index 2052b0e..92f8ce2 100644
--- src/hg/hgTracks/extTools.ra
+++ src/hg/hgTracks/extTools.ra
@@ -349,39 +349,39 @@
 #url http://the_brain.bwh.harvard.edu/uniprobe/browse.php
 #email uniprobe@genetics.med.harvard.edu
 #maxSize 80
 #param MAX_FILE_SIZE 2097152
 #param dnaSpeciesFormat all
 #param dnaThreshold 0.45
 #param dnaSpeciesTextArea             
 #param dnaSpeciesSingle Acanthamoeba castellanii
 #param dnaTextarea $seq
 #param searchParam 
 #param dnaSpeciesCategory Acanthamoeba castellanii,Allomyces macrogynus,Ashbya gossypii,Arabidopsis thaliana,Aspergillus nidulans,Caenorhabditis elegans,Cryptosporidium parvum,Drosophila melanogaster,Homo sapiens,Kluyveromyces lactis,Monosiga brevicollis,Mus musculus,Mycosphaerella graminicola,Nematostella vectensis,Patiria miniata,Plasmodium falciparum,Saccharomyces cerevisiae,Strongylocentrotus purpuratus,Trichoplax adhaerens,Tuber melanosporum
 #param dnaFile 
 #param dnaFormat textarea
 
 tool crispor
-url http://tefor.net/crispor/crispor.cgi
+url http://crispor.tefor.net/crispor.py
 email services@tefor.net
 shortLabel CRISPOR
 longLabel CRISPR/Cas9 target selector: off-target, activity predictions and primer design 
 param org $db
 param pos $position
 param pam NGG
 maxSize 1000
-onlyDbs hg19,hg38,ce10,dm3,mm10,oryLat2,rn5,sacCer3,xenTro3,galGal4,danRer7,danRer10
+onlyDbs hg19,hg38,ce10,dm3,mm10,oryLat2,rn5,rn6,sacCer3,xenTro3,galGal4,galGal5,danRer7,danRer10,ci2,ci3,equCab2,gasAcu1,loPe1,musFur1,oryLat2,panTro4,papAnu2,rheMac2
 
 tool chopchop
 url https://chopchop.rc.fas.harvard.edu/search.php
 email tessa.montague@gmail.com
 shortLabel CHOPCHOP
 longLabel CRISPR/Cas9 off-target predictions
 maxSize 1000
 onlyDbs anoGam1,ce10,dm3,hg19,hg38,danRer7,galGal4,gasAcu1,mm10,musFur1,rn6,oryLat2,sacCer3,xenTro3
 param organism $db
 param pasteSeq $seq
 param position $position
 param method CRISPR
 param target CODING
 param subsetExon 
 param padding