8e631f4b4257d705fba6bc09c88ded580d57aabd kate Wed Sep 27 10:43:48 2017 -0700 Add SQL to load GTEx eQTL tissue tracks. refs #15646 diff --git src/hg/lib/gtexEqtl.as src/hg/lib/gtexEqtl.as index 864063b..84e392f 100644 --- src/hg/lib/gtexEqtl.as +++ src/hg/lib/gtexEqtl.as @@ -1,18 +1,18 @@ table gtexEqtl "BED 9+ of eQTLs (variants affecting gene expression) with a target gene, effect size, p-value, and causal probability metric" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of variant (rsID or GTEx identifier if none)" uint score; "Score from 0-1000" char[1] strand; "." uint thickStart; "Start position" uint thickEnd; "End position" uint reserved; "R,G,B color: red for up-regulated, blue for down. Bright for high, grayed for low." string gene; "Name of target gene" int distance; "Distance from TSS" - float effectSize; "Effect size (FPKM); regression slope calculated using quantile normalized expression" + float effectSize; "Effect size (FPKM). Regression slope calculated using quantile normalized expression" float pValue; "Nominal p-value" float causalProb; "Probability variant is in 95% credible set" )