51e5d640cf0700de6c9acb3c29ca61855943067f galt Tue Oct 10 11:30:08 2017 -0700 gtexEqtlTissue.as is an exact duplicate of gtexEqtl.as. buildTableDescriptions finds and forbids duplicates. No other known dependencies on this new file yet. dropping with git rm. Kate can add it back when she returns. diff --git src/hg/lib/gtexEqtlTissue.as src/hg/lib/gtexEqtlTissue.as deleted file mode 100644 index a053801..0000000 --- src/hg/lib/gtexEqtlTissue.as +++ /dev/null @@ -1,19 +0,0 @@ -table gtexEqtl -"BED 9+ of expression Quantitative Trait Loci (eQTL). These are variants affecting gene expression" - ( - string chrom; "Reference sequence chromosome or scaffold" - uint chromStart; "Start position in chromosome" - uint chromEnd; "End position in chromosome" - string name; "Variant/gene pair" - uint score; "Score from 0-1000 (highest probabiliity in cluster * 1000)" - char[1] strand; "." - uint thickStart; "Start position" - uint thickEnd; "End position" - uint reserved; "R,G,B color: red +effect, blue -effect. Bright for high, pale for lower (cutoff effectSize 2.0 RPKM)." - string variant; "Variant (rsID or GTEx identifier if none)" - string gene; "Target gene" - int distance; "Distance from TSS" - float effectSize; "Effect size (FPKM)" - float pValue; "Nominal p-value" - float causalProb; "Probability variant is in 95 percent credible set" - )