File Changes for max

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v356_base to v357_preview (2017-10-09 to 2017-10-16) v357

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src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c
- lines changed 3, context: html, text, full: html, text
  c80ad337d8e24c79da3a927a6c2a5f40c9251075 Fri Oct 13 16:44:15 2017 -0700
  CIRM: fixing missing extensions for tarballs submitted as unknown filetype
src/hg/hgc/hgc.c
- lines changed 9, context: html, text, full: html, text
  5fc4e4b808fce37ff781fd27d6782808ebbb5e92 Wed Oct 11 14:06:15 2017 -0700
  allowing trackDb statement dataVersion to be a file name, refs #20174
src/hg/makeDb/trackDb/uniprot.html
- lines changed 37, context: html, text, full: html, text
  a409e830ae5c049aae9015e98aba82b186000cc0 Wed Oct 11 11:05:15 2017 -0700
  now that uniprot track is released, add back the temp file remove commands, and adding Chris to the track desc page, refs #20174
src/hg/pslSelect/pslSelect.c
- lines changed 47, context: html, text, full: html, text
  c8d8db67358f26a4150328fdc1d3e6849eaa01ee Thu Oct 5 16:13:34 2017 -0700
  changing pslSelect for uniprot track, refs #20174
src/hg/pslSelect/tests/expected/queryPairs2.out.psl
- lines changed 3, context: html, text, full: html, text
  c8d8db67358f26a4150328fdc1d3e6849eaa01ee Thu Oct 5 16:13:34 2017 -0700
  changing pslSelect for uniprot track, refs #20174
src/hg/pslSelect/tests/input/queryPairs2.in.psl
- lines changed 5, context: html, text, full: html, text
  c8d8db67358f26a4150328fdc1d3e6849eaa01ee Thu Oct 5 16:13:34 2017 -0700
  changing pslSelect for uniprot track, refs #20174
src/hg/pslSelect/tests/input/queryPairs2.queries
- lines changed 3, context: html, text, full: html, text
  c8d8db67358f26a4150328fdc1d3e6849eaa01ee Thu Oct 5 16:13:34 2017 -0700
  changing pslSelect for uniprot track, refs #20174
src/hg/pslSelect/tests/makefile
- lines changed 7, context: html, text, full: html, text
  c8d8db67358f26a4150328fdc1d3e6849eaa01ee Thu Oct 5 16:13:34 2017 -0700
  changing pslSelect for uniprot track, refs #20174
src/hg/utils/otto/README.md
- lines changed 3, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
src/hg/utils/otto/clinvar/clinVarToBed
- lines changed 3, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
- lines changed 13, context: html, text, full: html, text
  b36c36e95e76f131b6fc05719fd3d39df585cfed Tue Oct 10 14:58:58 2017 -0700
  fixing features with names that are just a number, refs #20268
- lines changed 13, context: html, text, full: html, text
  379ae9b004b804fac2cb1681934c9c33d7250a2c Wed Oct 11 17:37:18 2017 -0700
  fixing number-only names in clinvar, refs #20268
- lines changed 8, context: html, text, full: html, text
  5d06774aa3598b4b5cba29ba426c9b79f6967c28 Thu Oct 12 11:08:56 2017 -0700
  another fix for clinvar again, refs #20268
- lines changed 8, context: html, text, full: html, text
  23f219ade6005831496b8e31507cdeab988dd8ae Thu Oct 12 12:44:21 2017 -0700
  shortening a few very long labels in clinvar, refs #20268
src/hg/utils/otto/uniprot/README.txt
- lines changed 1, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
src/hg/utils/otto/uniprot/doUniprot
- lines changed 680, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
- lines changed 39, context: html, text, full: html, text
  c023499db31b1b6f72eb83f3ccb76b239d81d0c0 Tue Oct 10 16:08:27 2017 -0700
  creating uniprot version file for Jorges auto archiver now at the very very end of the pipeline, refs #20268
- lines changed 2, context: html, text, full: html, text
  a409e830ae5c049aae9015e98aba82b186000cc0 Wed Oct 11 11:05:15 2017 -0700
  now that uniprot track is released, add back the temp file remove commands, and adding Chris to the track desc page, refs #20174
- lines changed 2, context: html, text, full: html, text
  5fc4e4b808fce37ff781fd27d6782808ebbb5e92 Wed Oct 11 14:06:15 2017 -0700
  allowing trackDb statement dataVersion to be a file name, refs #20174
src/hg/utils/otto/uniprot/makeUniProtPsl.sh
- lines changed 127, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
- lines changed 1, context: html, text, full: html, text
  a409e830ae5c049aae9015e98aba82b186000cc0 Wed Oct 11 11:05:15 2017 -0700
  now that uniprot track is released, add back the temp file remove commands, and adding Chris to the track desc page, refs #20174
src/hg/utils/otto/uniprot/makefile
- lines changed 2, context: html, text, full: html, text
  a5eeaf99743492594b017b6d289d578cd9f1c9cd Tue Oct 10 14:57:34 2017 -0700
  fixing stray files in uniprot, refs #20174
src/hg/utils/uniprotMutations/README.txt
- lines changed 31, context: html, text, full: html, text
  c643ac79e685df447f830a72d6a4bda6cb57014c Tue Oct 10 15:29:07 2017 -0700
  removing the old clinvar pipeline, refs #20268
src/hg/utils/uniprotMutations/liftUniprotMut.py
- lines changed 246, context: html, text, full: html, text
  c643ac79e685df447f830a72d6a4bda6cb57014c Tue Oct 10 15:29:07 2017 -0700
  removing the old clinvar pipeline, refs #20268
src/hg/utils/uniprotMutations/load.sh
- lines changed 8, context: html, text, full: html, text
  c643ac79e685df447f830a72d6a4bda6cb57014c Tue Oct 10 15:29:07 2017 -0700
  removing the old clinvar pipeline, refs #20268
src/utils/uniprotToTab
- lines changed 257, context: html, text, full: html, text
  cb3f1b0b44201216b5cdb2b89b6da201dc1c1f48 Tue Oct 10 09:20:47 2017 -0700
  fixing the UniProt parser for Regeneron, refs #20174
src/utils/webSync
- lines changed 4, context: html, text, full: html, text
  1ac3db7f3d267c2852d42da712976fe2d962809a Mon Oct 9 13:03:50 2017 -0700
  CIRM: allowing symlinks in the little webSync tool

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