Commits for chmalee

v357_preview to v357_preview2 (2017-10-16 to 2017-10-23) v357

46d90a1ac820195a1ebae1afd7ac6949245feca7 Tue Oct 17 10:20:23 2017 -0700

• Modifying gbic to pull from genome-euro mysql server instead of ucsc if mirror is closer to europe, refs #20353
  • src/product/installer/browserSetup.sh - lines changed 13, context: html, text, full: html, text

030f4b22a035f0173b0ccfa2b4e35e9d0d98475b Wed Oct 18 14:45:18 2017 -0700

• Setting gencode v27 lift 37 track to hide by default, refs #20145
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.ra - lines changed 1, context: html, text, full: html, text

a4700079d60d9e3d0c45b5093fd2f6d5922ca7a2 Wed Oct 18 15:34:54 2017 -0700

• Small short label change and removing mention of v27lift37 release from html, refs #20145
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.ra - lines changed 2, context: html, text, full: html, text

3324f081c3a4b0f19cd0c19173e071406d6cac8b Wed Oct 18 15:50:12 2017 -0700

• Another small label change for v27 lift37, refs #20145
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.ra - lines changed 1, context: html, text, full: html, text

a7b8720a72c79b3599ed58d8d347ea9edba45fac Thu Oct 19 08:35:56 2017 -0700

• Fixing typo from code review, refs #20346
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 1, context: html, text, full: html, text

4917a38c21a998a5f9710bb99b6d6e53f354c722 Thu Oct 19 12:03:21 2017 -0700

• Only check overlap with the gap table if we are not checking the gap table. Only check unbridged gaps if explicitly asked
  • python/lib/ucscGb/qa/tables/positionalQa.py - lines changed 2, context: html, text, full: html, text
  • src/utils/qa/runBits - lines changed 2, context: html, text, full: html, text

bf6bfb867e296f780ca706f1203ae6d643cc5d52 Thu Oct 19 12:30:05 2017 -0700

• woops still want to check overlaps unless gap table
  • src/utils/qa/runBits - lines changed 1, context: html, text, full: html, text

26a23f1bbc7c533ad38f8991fea1b9d767b05b46 Fri Oct 20 13:56:54 2017 -0700

• Adding link to ncbi assembly page, refs #19459
  • src/hg/makeDb/trackDb/zebrafish/danRer11/description.html - lines changed 2, context: html, text, full: html, text

db259d82f077f6d181572e6214596b449695413a Fri Oct 20 15:09:10 2017 -0700

• Making the default danRer11 more interesting hopefully, refs #19459
  • src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra - lines changed 8, context: html, text, full: html, text

29593c5117f7e86293e259e17c058d66f7f63952 Fri Oct 20 15:10:34 2017 -0700

• Fixing merge conflict
  • src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra - lines changed 14, context: html, text, full: html, text