Commits for hiram

v357_preview to v357_preview2 (2017-10-16 to 2017-10-23) v357

fe155fd1b7aff8f9a440e67651142e0a3c16b8f7 Wed Oct 18 10:17:40 2017 -0700

• ensGene v90 procedure refs #20304
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 80, context: html, text, full: html, text

734617027bf534df651101cdde7091467644ba26 Wed Oct 18 10:19:55 2017 -0700

• adding neoSch1 rules refs #10883
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text

9f806b5451eb211049fd06458407641f12b81a03 Wed Oct 18 13:04:59 2017 -0700

• add ucscToINSDC and chromAlias tables refs #20304
  • src/hg/makeDb/doc/hetGla1.txt - lines changed 76, context: html, text, full: html, text

8d273b39a68e206a39aab59877a04f61dcd8f281 Wed Oct 18 18:25:29 2017 -0700

• catch up new chainNet tracks aotNan1 cebCap1 cerAty1 eulFla1 eulMac1 manLeu1 papAnu3 proCoq1 refs #20216
  • src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 426, context: html, text, full: html, text

0bb88ac4d891d682e7714b526c3878a03639832c Thu Oct 19 08:09:56 2017 -0700

• Added cebCap1 - White-faced sapajou/Cebus capucinus imitator refs #20237
  • src/hg/makeDb/schema/all.joiner - lines changed 10, context: html, text, full: html, text

78aa66b91a6609a2973748de7456dbb00d1b3b1f Thu Oct 19 10:29:43 2017 -0700

• adding danRer11 definition refs #19459
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 55, context: html, text, full: html, text

409fb2a686ae881443dbb72faa35826d4f965806 Thu Oct 19 10:35:10 2017 -0700

• correct overrides for danRer11 chainNet refs #19459
  • src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text

f9454407d04cdf29778cdadfadb1934864dbf134 Thu Oct 19 11:30:39 2017 -0700

• catching up with latest primate browsers refs #20216
  • src/hg/utils/phyloTrees/primates.txt - lines changed 35, context: html, text, full: html, text

b9480d9a57979e46f2c799ae64d9c92fcee10c9d Thu Oct 19 13:13:55 2017 -0700

• adding all the primates refs #20216
  • src/hg/utils/phyloTrees/218.nh - lines changed 218, context: html, text, full: html, text

68cdaf91b16a35decc8a9fe5bcfa4eae30f0b14d Thu Oct 19 13:17:44 2017 -0700

• done and marked QA Ready refs #20237
  • src/hg/makeDb/doc/cebCap1/initialBuild.txt - lines changed 176, context: html, text, full: html, text

3aaa735fbb09c303fc0817b87fee7e1ace15328d Thu Oct 19 13:23:43 2017 -0700

• correct name 218way refs #20216
  • src/hg/utils/phyloTrees/218way.nh - lines changed 218, context: html, text, full: html, text

5fb96f1f6b042377e1c0a01f9654faab443c7266 Thu Oct 19 17:11:06 2017 -0700

• cleaner tableCoverage for criGri1 and criGriChoV1 refs #19228
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text

e621cfb0f90e066337f1106c3e19eef2e2d58946 Fri Oct 20 14:10:15 2017 -0700

• add search rule for gold/assembly track refs #19459
  • src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra - lines changed 5, context: html, text, full: html, text

e45b293ff69b4cdbe89a3e9b778daa9a84228efd Fri Oct 20 15:08:02 2017 -0700

• updated ucscToRefSeq and chromAlias cpgIslands done refs #19459
  • src/hg/makeDb/doc/danRer11/initialBuild.txt - lines changed 343, context: html, text, full: html, text

49584f9001afc0b16257aa22e60be5236108aa1e Fri Oct 20 23:44:42 2017 -0700

• beginning to construct the 27-way refs #20216
  • src/hg/makeDb/doc/hg38/multiz27way.txt - lines changed 1685, context: html, text, full: html, text

d640139afb9521940979e1c1ea473b8b0ed97e06 Mon Oct 23 09:54:49 2017 -0700

• v357 preview2 refs #20358
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text