Commits for jnavarr5

v357_preview to v357_preview2 (2017-10-16 to 2017-10-23) v357

097c8b89621b6a2861229bd626b8a0b4a3840a5c Thu Oct 12 08:26:38 2017 -0700

• Fixing broken links found by the broken link report for canFam2, no Redmine.
  • src/hg/makeDb/trackDb/dog/canFam2/multiz4way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/uncertified.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/snp131.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeNhgriBip.html - lines changed 5, context: html, text, full: html, text

3ac917c15b6c6e0400757a75161db89271b0a6ad Fri Oct 13 04:42:18 2017 -0700

• Merge branches 'master', 'master' and 'master' of hgwdev.cse.ucsc.edu:/data/git/kent

51e525385ec68b4723f648c63e08f7f9d90b9413 Mon Oct 16 04:42:12 2017 -0700

• Merge branches 'master', 'master' and 'master' of hgwdev.cse.ucsc.edu:/data/git/kent

0514d5fe3904bcaa2ee97c4969635aefcd30ccff Tue Oct 17 04:42:18 2017 -0700

• Merge branches 'master', 'master' and 'master' of hgwdev.cse.ucsc.edu:/data/git/kent

b4051aba1c15e04bf9829a8fe142ef1c159706ca Wed Oct 18 04:42:18 2017 -0700

• Merge branches 'master', 'master' and 'master' of hgwdev.cse.ucsc.edu:/data/git/kent

0046b8d7a1a1c4a2ff88863c4266b4c607f7ba11 Wed Oct 18 10:05:13 2017 -0700

• Fixing broken links found by the broken link report for droAna2, no Redmine.
  • src/hg/makeDb/trackDb/drosophila/droAna2/gap.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droAna2/gold.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/geneMapper.html - lines changed 1, context: html, text, full: html, text

31e4f1a7c833fb9b423e938d4fa71729c1c2d964 Fri Oct 20 12:02:41 2017 -0700

• Adding the missing shared html page to the super track. Removing   HTML code for the barchart image. refs #19155
  • src/hg/makeDb/trackDb/human/hg38/cancerExpr.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 1, context: html, text, full: html, text

53caae44d7049cebdee27a41e23e3b8126d72840 Fri Oct 20 12:17:25 2017 -0700

• Removing these two HTML pages since they are no longer used. They have been replaced with tcgaExpr.html, refs #19155
  • src/hg/makeDb/trackDb/human/hg38/tcgaGeneExpr.html - lines changed 87, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/tcgaTranscExpr.html - lines changed 85, context: html, text, full: html, text

3187ea3d609ee0e9e356cf03f8979ad5df47b67a Fri Oct 20 16:51:19 2017 -0700

• Replacing 'human' with '$ organism' in the shared NCBI RefSeq HTML page, refs #18997
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text

2b7f27dd7b3db07fba4837694b5bedad155a96c0 Fri Oct 20 16:59:02 2017 -0700

• Adding a bigDataUrl trackDb setting to remove the MySQL dependency, refs #18897
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 1, context: html, text, full: html, text