f7522e86274cd85385dd457579ee209867a9233d markd Mon Oct 16 15:04:57 2017 -0700 added pslRc command diff --git src/hg/utils/makefile src/hg/utils/makefile index 5d53f96..50d1e96 100644 --- src/hg/utils/makefile +++ src/hg/utils/makefile @@ -33,30 +33,31 @@ genePredToBigGenePred \ genePredToProt \ gff3ToGenePred \ gff3ToPsl \ gtfToGenePred \ hubCheck \ hubPublicCheck \ mafToBigMaf \ makeTableList \ oligoMatch \ overlapSelect \ positionalTblCheck \ pslToBigPsl \ pslMap \ pslMapPostChain \ + pslRc \ tdbQuery \ transMapPslToGenePred \ twoBitMask USER_APP_SCRIPTS = \ vai.pl SCRIPT_FILES = \ dbNsfpToBed.pl \ dumpDb.pl \ mergeOverlapBed4.pl \ mergeSortedBed3Plus.pl \ ${USER_APP_SCRIPTS} APP_SCRIPTS = ${SCRIPT_FILES} @@ -75,30 +76,31 @@ safePush \ toDev64 \ vcfToHgvs \ wigBedToStep TEST_DIRS = \ genePredFilter \ genePredToProt \ gff3ToGenePred \ gff3ToPsl \ gtfToGenePred \ hgvsToVcf \ hubCheck \ overlapSelect \ pslMap \ + pslRc \ pslToBigPsl \ refSeqGet \ transMapPslToGenePred \ vcfToHgvs APPS = $(DIRS) $(UTILS_APPLIST) all:: utils utils: $(APPS:%=%.utils) $(APP_SCRIPTS:%=%.appScript) %.utils: cd $* && echo $* && $(MAKE) %.appScript: chmod +x $* rm -f ${DESTDIR}${SCRIPTS}/$*