| \n" " \n" "\n" " | \n" "
|---|
| No Unlisted Track Hubs |
| Display | " "Hub Name | " "Description | " "Assemblies | " "
|---|
clearing hub %s\n",url);
if (url != NULL)
hubClearStatus(url);
else
errAbort("must specify url in %s\n", hgHubDataText);
printf("Completed\n");
}
static void checkTrackDbs(struct hubConnectStatus *hubList)
{
struct hubConnectStatus *hub = hubList;
for(; hub; hub = hub->next)
{
struct errCatch *errCatch = errCatchNew();
if (errCatchStart(errCatch))
{
hubAddTracks(hub, database);
}
errCatchEnd(errCatch);
if (errCatch->gotError)
{
hub->errorMessage = cloneString(errCatch->message->string);
hubUpdateStatus( errCatch->message->string, hub);
}
else
hubUpdateStatus(NULL, hub);
}
}
void doMiddle(struct cart *theCart)
/* Write header and body of html page. */
{
cart = theCart;
if(cgiIsOnWeb())
checkForGeoMirrorRedirect(cart);
if (cartVarExists(cart, hgHubDoClear))
{
doClearHub(cart);
cartWebEnd();
return;
}
if (cartVarExists(cart, hgHubCheckUrl))
{
doResetHub(cart);
}
if (cartVarExists(cart, hgHubDoRedirect))
{
if (doRedirect(cart))
{
cartWebEnd();
return;
}
}
cartWebStart(cart, NULL, "%s", pageTitle);
printf(
"\n"
"\n"
"\n"
"\n"
);
jsIncludeFile("utils.js", NULL);
jsIncludeFile("jquery-ui.js", NULL);
webIncludeResourceFile("jquery-ui.css");
jsIncludeFile("ajax.js", NULL);
jsIncludeFile("hgHubConnect.js", NULL);
webIncludeResourceFile("hgHubConnect.css");
jsIncludeFile("jquery.cookie.js", NULL);
printf(" \n");
printf(
"Track data hubs are collections of external tracks that can be imported into the UCSC Genome Browser. "
"Hub tracks show up under the hub's own blue label bar on the main browser page, "
- "as well as on the configure page. For more information, see the "
+ "as well as on the configure page. For more information, including where to "
+ "host your track hub, see the "
""
"User's Guide."
"To import a public hub click its \"Connect\" button below.
"
"NOTE: Because Track Hubs are created and maintained by external sources,"
" UCSC is not responsible for their content.
"
);
printf("\n");
getDbAndGenome(cart, &database, &organism, oldVars);
char *survey = cfgOptionEnv("HGDB_HUB_SURVEY", "hubSurvey");
char *surveyLabel = cfgOptionEnv("HGDB_HUB_SURVEY_LABEL", "hubSurveyLabel");
if (survey && differentWord(survey, "off"))
hPrintf("%s\n", survey, surveyLabel ? surveyLabel : "Take survey");
hPutc('\n');
// grab all the hubs that are listed in the cart
struct hubConnectStatus *hubList = hubConnectStatusListFromCartAll(cart);
checkTrackDbs(hubList);
// here's a little form for the add new hub button
printf("");
// this is the form for the connect hub button
printf("");
// this is the form for the disconnect hub button
printf("");
// this is the form for the reset hub button
printf("");
// this is the form for the search hub button
printf("");
// ... and now the main form
printf("");
printf("\n");
jsInline(
"var hubSearchTree = (function() {\n"
" // Effectively global vars set by init\n"
" var treeDiv; // Points to div we live in\n"
"\n"
" function hubSearchTreeContextMenuHandler (node, callback) {\n"
" var nodeType = node.li_attr.nodetype;\n"
" if (nodeType == 'track') {\n"
" callback({\n"
" 'openConfig': {\n"
" 'label' : 'Configure this track',\n"
" 'action' : function () {window.open(node.li_attr.configlink, '_blank'); }\n"
" }\n"
" });\n"
" }\n"
" else if (nodeType == 'assembly') {\n"
" callback({\n"
" 'openConfig': {\n"
" 'label' : 'Open this assembly',\n"
" 'action' : function () {window.open(node.li_attr.assemblylink, '_blank'); }\n"
" }\n"
" });\n"
" }\n"
" }\n"
" function toggleExpansion(node, event) {\n"
" var ident = '#' + node.id;\n"
" if (event.type != 'contextmenu')\n"
" $(ident).jstree(true).toggle_node(node);\n"
" return false;\n"
" }\n"
" function init() {\n"
" $.jstree.defaults.core.themes.icons = false;\n"
" $.jstree.defaults.core.themes.dots = true;\n"
" $.jstree.defaults.contextmenu.show_at_node = false;\n"
" $.jstree.defaults.contextmenu.items = hubSearchTreeContextMenuHandler\n"
" treeDiv=$('.hubTdbTree');\n"
" treeDiv.jstree({\n"
" 'conditionalselect' : function (node, event) { toggleExpansion(node, event); },\n"
" 'plugins' : ['conditionalselect', 'contextmenu'],\n"
" 'core' : { dblclick_toggle: false }\n"
" });\n"
" }\n\n"
" return { init: init};\n\n"
"}());\n"
"\n"
"$(function () {\n"
" hubSearchTree.init();\n"
"});\n"
);
cartWebEnd();
}
char *excludeVars[] = {"Submit", "submit", "hc_one_url",
hgHubCheckUrl, hgHubDoClear, hgHubDoDisconnect,hgHubDoRedirect, hgHubDataText,
hgHubConnectRemakeTrackHub, NULL};
int main(int argc, char *argv[])
/* Process command line. */
{
long enteredMainTime = clock1000();
oldVars = hashNew(10);
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
cgiExitTime("hgHubConnect", enteredMainTime);
return 0;
}