6fdd5908880d6a2fb2e4f7235679981888d8055b
hiram
  Tue Nov 14 13:37:59 2017 -0800
avoid verbose argument on a few commands no redmine

diff --git src/utils/userApps/mkREADME.sh src/utils/userApps/mkREADME.sh
index e452209..8d07aaf 100755
--- src/utils/userApps/mkREADME.sh
+++ src/utils/userApps/mkREADME.sh
@@ -1,50 +1,59 @@
 #!/bin/sh
 # script to create a FOOTER (or README) file from all usage messages
 #	of binaries found in specified directory
 #
 #========================================================================
 #	$Id: mkREADME.sh,v 1.3 2009/07/31 21:14:03 ann Exp $
 #========================================================================
 #
 usage() {
     echo "usage: mkREADME.sh DESTDIR/BINDIR FOOTER"
     echo "where DESTDIR/BINDIR is where all the binaries are"
     echo "and FOOTER is the name of the result file"
     exit 255
 }
 
 if [ "$#" -ne 2 ]; then
     usage
 fi
 
 DESTDIR=$1
 RESULT=$2
 
 if [ ! -d "${DESTDIR}" ]; then
     echo "ERROR: specified destination directory \"${DESTDIR}\""
     echo "	does not exist."
     usage
 fi
 
 cd "${DESTDIR}"
 
 echo "================================================================
 to download all of the files from one of these admin/exe/ directories,
   for example: admin/exe/linux.x86_64/
     using the rsync command to your current directory:
 
   rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./
 
 ================================================================" > "${RESULT}"
 
+# a few of the commands do not understand just a -verbose=2 argument
+# some of those could be fixed TBD
+
 find . -mindepth 1 -type f | grep -v -w hgsql | sed -e "s/^.\///; /mkREADME.sh/d" | sort | \
 while read F
 do
     if [ -x "${F}" ]; then
 	echo "========   ${F}   ===================================="
 	echo "================================================================"
+        case "${F}" in
+           ameme|aveCols|catUncomment|fetchChromSizes|gmtime|localtime|hgsqldump|pslPairs|qaToQac)
 	     ./${F}
+             ;;
+           *)
+	     ./${F} -verbose=2
+        esac
 	echo "================================================================"
 	fi
 done >> "${RESULT}" 2>&1