8621d381fa72623be321c96e4ac19e652a01147a hiram Tue Nov 14 14:37:14 2017 -0800 eliminate one ERROR: message no redmine diff --git src/utils/userApps/mkREADME.sh src/utils/userApps/mkREADME.sh index 63fd70d..2c53188 100755 --- src/utils/userApps/mkREADME.sh +++ src/utils/userApps/mkREADME.sh @@ -1,59 +1,59 @@ #!/bin/sh # script to create a FOOTER (or README) file from all usage messages # of binaries found in specified directory # #======================================================================== # $Id: mkREADME.sh,v 1.3 2009/07/31 21:14:03 ann Exp $ #======================================================================== # usage() { echo "usage: mkREADME.sh DESTDIR/BINDIR FOOTER" echo "where DESTDIR/BINDIR is where all the binaries are" echo "and FOOTER is the name of the result file" exit 255 } if [ "$#" -ne 2 ]; then usage fi DESTDIR=$1 RESULT=$2 if [ ! -d "${DESTDIR}" ]; then echo "ERROR: specified destination directory \"${DESTDIR}\"" echo " does not exist." usage fi cd "${DESTDIR}" echo "================================================================ to download all of the files from one of these admin/exe/ directories, for example: admin/exe/linux.x86_64/ using the rsync command to your current directory: rsync -aP rsync://hgdownload.cse.ucsc.edu/genome/admin/exe/linux.x86_64/ ./ ================================================================" > "${RESULT}" # a few of the commands do not understand just a -verbose=2 argument # some of those could be fixed TBD find . -mindepth 1 -type f | grep -v -w hgsql | sed -e "s/^.\///; /mkREADME.sh/d" | sort | \ while read F do if [ -x "${F}" ]; then echo "======== ${F} ====================================" echo "================================================================" case "${F}" in ameme|aveCols|catUncomment|fetchChromSizes|gmtime|localtime|hgsqldump|pslPairs|qaToQac|bedJoinTabOffset|expMatrixToBarchartBed|webSync|vai.pl) ./${F} ;; *) ./${F} -verbose=2 esac echo "================================================================" fi -done >> "${RESULT}" 2>&1 +done | grep -v "^ERROR:" >> "${RESULT}" 2>&1