Commits for jcasper

v358_preview2 to v358_base (2017-11-13 to 2017-11-27) v358

f7c5efce7a6b1fc3f008fa88de6a2f1ec276cce6 Wed Nov 15 16:08:04 2017 -0800

• Updating OMIM AV SNPs to use snp150 on hg19 and hg38, refs #18151
  • src/hg/makeDb/trackDb/human/omimAvSnp.html - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/omim/buildOmimTracks.sh - lines changed 4, context: html, text, full: html, text

cdad6fbfca3f0dcf14335e0dc08afe3f0147b874 Wed Nov 15 16:10:07 2017 -0800

• doOmimGene2 now uses hgFixed.refLink (its new location), and makefile has a clean target, refs #18151
  • src/hg/utils/otto/omim/doOmimGene2/doOmimGene2.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/omim/makefile - lines changed 5, context: html, text, full: html, text

efea57415b269611f9e9b44518853bfd645a08c4 Wed Nov 15 16:23:03 2017 -0800

• Updating GWAS pipeline to use snp150, refs #18151
  • src/hg/utils/otto/gwas/checkGwas.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/gwas/expectedColumns.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/utils/otto/gwas/makefile - lines changed 2, context: html, text, full: html, text