Commits for jnavarr5

v358_preview2 to v358_base (2017-11-13 to 2017-11-27) v358

ae937fe973bedfd216bc16222a742ac359846a27 Wed Nov 15 11:01:21 2017 -0800

• Minor edit to a sentence for better flow. Adding the word 'track' after UCSC RefSeq, refs #18997
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text

07056f88aa8c5942cc22363190db655a4f082f57 Wed Nov 15 13:13:33 2017 -0800

• Adding a missing period to the track description page. Adding a <p> tag to the Contacts section. Updating redirected URLs in the References section, refs #19638
  • src/hg/makeDb/trackDb/refSeqFuncElems.html - lines changed 11, context: html, text, full: html, text

07667c7505a00f60ab64a057da49ec26eb705685 Wed Nov 15 15:26:16 2017 -0800

• Renaming the 'Credits' section to 'References', refs #19638
  • src/hg/makeDb/trackDb/refSeqFuncElems.html - lines changed 1, context: html, text, full: html, text

8b11c5f5244d10fd4930abcbb61edbac757500a6 Thu Nov 16 07:29:24 2017 -0800

• Removing 'contact, support and questions' section since it mentions the track hub and questions should be sent to our mailing list for this native track, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 8, context: html, text, full: html, text

da939d96c13d9b444678b99dc1a10f310085dce4 Thu Nov 16 08:35:53 2017 -0800

• Adding <p> tags to the definition list to remove the need for a <br> tag. refs #19154
  • src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 17, context: html, text, full: html, text

372d308c816475ce0c64f9eacd59a9ac36bba9ca Thu Nov 16 08:45:52 2017 -0800

• Removing 'we' when explaining how the bisulfite genomes were created. refs #19154
  • src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 3, context: html, text, full: html, text

b15fa726528606884a2c8e50708a2f77c16c32c0 Thu Nov 16 09:06:00 2017 -0800

• Fixing indentation spacing that was lost after replacing tabs with spaces, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

5dcbeef58de3a608782ebe080e04e77c37b2f23b Thu Nov 16 09:20:38 2017 -0800

• Setting the Umap single read mappability tracks to squish by default. refs #19154
  • src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 1, context: html, text, full: html, text

47f337cfa1e442d613ac7d9f5b793b702ca93fca Thu Nov 16 10:38:48 2017 -0800

• Adding Data Access section to the track description page, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 23, context: html, text, full: html, text

9a32fd6e37ac57e7e5b510038462f704c9a79329 Thu Nov 16 11:22:20 2017 -0800

• Removing redundant lines to the view level, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 31, context: html, text, full: html, text

88bb9d1b77122f263417ccce39b6ba26ae5a5b3e Fri Nov 17 08:48:01 2017 -0800

• Fixing broken links for xenTro1, no Redmine.
  • src/hg/makeDb/trackDb/blatFr1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/jgiFilteredModels.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/multiz5way.html - lines changed 3, context: html, text, full: html, text

c87a72d1f53485c8765e28d33592133c6a58428a Mon Nov 20 09:29:04 2017 -0800

• Fixing broken links found by the broken link report for geoFor1, no Redmine.
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 3, context: html, text, full: html, text

c4e387173b512c619730fc1d4402886eee123367 Mon Nov 20 16:30:10 2017 -0800

• Staging NCBI RefSeq genes for mm10 on hgwbeta, refs #18997
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

529a0b2a0bdcfba12ed0ee7e8f8d44c91b7ee200 Tue Nov 21 08:36:24 2017 -0800

• Fixing broken links found by the broken link report for caePb2, no redmine.
  • src/hg/makeDb/trackDb/worm/xenoMrna.html - lines changed 1, context: html, text, full: html, text

f7ab5f57224cf66aceaef5725d64928cb3f60945 Tue Nov 21 08:44:52 2017 -0800

• Staging NCBI RefSeq Genes for mm10 on hgwbeta, refs #18997
  • src/hg/makeDb/trackDb/mouse/mm10/defaultPriority.ra - lines changed 1, context: html, text, full: html, text

33d46c92e8bc196c10a7f58ab71195c71a8962b0 Tue Nov 21 13:24:42 2017 -0800

• Releasing NCBI RefSeq Genes track for mm10, refs #18997
  • src/hg/makeDb/trackDb/mouse/mm10/defaultPriority.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

4e30703662f46628853f5e04cc9a32a1c5eb23e1 Tue Nov 21 13:58:22 2017 -0800

• Announcing the NCBI RefSeq Gene tracks for mm10, refs #18997
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 31, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 16, context: html, text, full: html, text

a6a8ebe2f7aab4ba300e0b7126f57882dad9cc3c Tue Nov 21 15:08:40 2017 -0800

• Fixing broken link in the example bigBed command, refs #18997
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text

2eae7e50194888dd23a4731c977f9c95f7814c90 Tue Nov 21 15:40:02 2017 -0800

• Minor edit to the NCBI RefSeq announcement, refs #18997
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 3, context: html, text, full: html, text

2ac58f7c6b428f8bc7f7c6840b210b05196f1a39 Mon Nov 27 09:45:40 2017 -0800

• Fixing broken links for caeRem1, no Redmine.
  • src/hg/makeDb/trackDb/worm/chainCe4.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/chainPriPac1.html - lines changed 1, context: html, text, full: html, text