File Changes for galt

v357_base to v358_preview (2017-10-30 to 2017-11-06) v358

• src/hg/cirm/cdw/cdwBackup/makefile
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    d250a10d6a82f03f2852ee8e43723632ff360b9a Wed Nov 1 13:33:28 2017 -0700
    Fixing make clean for cdw/
• src/hg/cirm/cdw/cdwFindSymlinkable/cdwFindSymlinkable.c
  • lines changed 197, context: html, text, full: html, text
    91379d70225b99cfb071fd339f7f89c149e302ec Wed Nov 1 15:12:27 2017 -0700
    adding new utility to find symlinkable files for cdw.
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    961f73c71116eba96edfd213fb1b057a5cbdd0a9 Fri Nov 3 13:28:31 2017 -0700
    Adding some more handy double-checking to the cdw symlinker.
• src/hg/cirm/cdw/cdwFindSymlinkable/makefile
  • lines changed 4, context: html, text, full: html, text
    91379d70225b99cfb071fd339f7f89c149e302ec Wed Nov 1 15:12:27 2017 -0700
    adding new utility to find symlinkable files for cdw.
• src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c
  • lines changed 26, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
• src/hg/cirm/cdw/cdwReallyRemoveDataset/cdwReallyRemoveDataset.c
  • lines changed 4, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
• src/hg/cirm/cdw/cdwReallyRemoveFiles/cdwReallyRemoveFiles.c
  • lines changed 3, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
  • lines changed 19, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
  • lines changed 3, context: html, text, full: html, text
    a69e35d913d0c9bc99b2d1814635467e7c062ecd Wed Nov 1 15:20:00 2017 -0700
    oops, need to ren-enable pipeline call
• src/hg/cirm/cdw/cdwSummary/makefile
  • lines changed 3, context: html, text, full: html, text
    d250a10d6a82f03f2852ee8e43723632ff360b9a Wed Nov 1 13:33:28 2017 -0700
    Fixing make clean for cdw/
• src/hg/cirm/cdw/cdwUnlockSubmittedFile/cdwUnlockSubmittedFile.csh
  • lines changed 19, context: html, text, full: html, text
    79196cfbc8d6c9140569d96fb0e8f699301001b5 Wed Nov 1 17:29:35 2017 -0700
    Adding cdwUnlockSubmittedFile.csh to allow wranglers to change a submitted file in the wrangle dir back to an file they can edit again. After checking that the symlink is valid, it removes it and makes a copy of its target that is writeable.
• src/hg/cirm/cdw/cdwUnlockSubmittedFile/makefile
  • lines changed 13, context: html, text, full: html, text
    79196cfbc8d6c9140569d96fb0e8f699301001b5 Wed Nov 1 17:29:35 2017 -0700
    Adding cdwUnlockSubmittedFile.csh to allow wranglers to change a submitted file in the wrangle dir back to an file they can edit again. After checking that the symlink is valid, it removes it and makes a copy of its target that is writeable.
• src/hg/cirm/cdw/inc/cdwLib.h
  • lines changed 13, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
• src/hg/cirm/cdw/lib/cdwLib.c
  • lines changed 166, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
• src/hg/cirm/cdw/makefile
  • lines changed 1, context: html, text, full: html, text
    8877724b8354227a11c7702ac006931881107e74 Wed Nov 1 15:05:52 2017 -0700
    cdw changes to support symlinks instead of copying to save space.
  • lines changed 1, context: html, text, full: html, text
    79196cfbc8d6c9140569d96fb0e8f699301001b5 Wed Nov 1 17:29:35 2017 -0700
    Adding cdwUnlockSubmittedFile.csh to allow wranglers to change a submitted file in the wrangle dir back to an file they can edit again. After checking that the symlink is valid, it removes it and makes a copy of its target that is writeable.
• src/hg/cirm/cdw/utils/cdwVcfStats/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    d250a10d6a82f03f2852ee8e43723632ff360b9a Wed Nov 1 13:33:28 2017 -0700
    Fixing make clean for cdw/
• src/hg/cirm/cdw/wrangle/addMetaDataToJson/makefile
  • lines changed 1, context: html, text, full: html, text
    9fb246d429b86813fbd87b2032fddc2814e22102 Wed Nov 1 17:36:03 2017 -0700
    fixing some minor makefile issues.
• src/hg/cirm/cdw/wrangle/makefile
  • lines changed 1, context: html, text, full: html, text
    9fb246d429b86813fbd87b2032fddc2814e22102 Wed Nov 1 17:36:03 2017 -0700
    fixing some minor makefile issues.
• src/hg/cirm/cdw/wrangle/matrixFilter/makefile
  • lines changed 0, context: html, text, full: html, text
    d250a10d6a82f03f2852ee8e43723632ff360b9a Wed Nov 1 13:33:28 2017 -0700
    Fixing make clean for cdw/
• src/hg/lib/jksql.c
  • lines changed 3, context: html, text, full: html, text
    5481476932dcbcff3c36b1b77633f699cb0d7a85 Mon Oct 30 13:21:53 2017 -0700
    Code review feedback.