Commits for jnavarr5

f09149e29bf74efbf44a86fcba0fc20c8eede012 Mon Nov 6 16:28:15 2017 -0800

Updating the track names to match our MySQL table naming scheme. Adding missing release tags in the view stanza. Removing underscores from the shortLable as well. refs #19154
- src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 67, context: html, text, full: html, text

644ce0151823516d795832c96d581a2775171a25 Mon Nov 6 16:40:59 2017 -0800

Moving 'release alpha' tag to the include directive to avoid having a release tag on every stanza. refs #19154
- src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

793784b72ff28b3ceabdbdd480f1d3d84f2bf5c2 Mon Nov 6 16:52:59 2017 -0800

Staging the TCGA transcript and gene expression tracks on hgwbeta, refs #19155
- src/hg/makeDb/trackDb/human/hg38/cancerExpr.ra - lines changed 2, context: html, text, full: html, text

dbd96f7c976b90ac673eb340f2fa6f03c1828f67 Tue Nov 7 09:25:46 2017 -0800

Fixing broken links for panTro2 found by the broken link report, no Redmine.
- src/hg/makeDb/trackDb/human/bamSLDenisova.html - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/nscanGene.html - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ntSeqContigs.html - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ntSeqReads.html - lines changed 1, context: html, text, full: html, text

ed39f3444d93ee5ab35c60f69a2d1bee7df19192 Tue Nov 7 10:26:47 2017 -0800

Removing the release tag, refs #19155
- src/hg/makeDb/trackDb/human/hg38/cancerExpr.ra - lines changed 2, context: html, text, full: html, text

a7a04e048b9f9ff371808102e4db1ca7872b6cc0 Thu Nov 9 07:43:59 2017 -0800

Fixing broken links found by the broken link report for cavPor3, no Redmine.
- src/hg/makeDb/trackDb/guineaPig/cavPor3/nscanGene.html - lines changed 3, context: html, text, full: html, text

457e2146d5e7b6577656243561a0a765c9280f30 Thu Nov 9 12:50:59 2017 -0800

Combining the Bismap and Umap HTML pages so it can be shared between all three pages (super track and composites), refs #19154
- src/hg/makeDb/trackDb/human/hg38/bismap.html - lines changed 77, context: html, text, full: html, text

fc386f90029de2ecef527724c666f8adc31dc4b8 Thu Nov 9 12:52:13 2017 -0800

Renaming the shared HTML page from 'bismap.html' to 'mappability.html', refs #19154
- src/hg/makeDb/trackDb/human/hg38/bismap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 62, context: html, text, full: html, text

061ed9d49208a5e2f9870cfb3562ef0e88a1d1e5 Thu Nov 9 12:57:57 2017 -0800

Making Bismap and Umap composites use the shared HTML page. Removing the 'umap.html' as it is not needed anymore. refs #19154
- src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/umap.html - lines changed 48, context: html, text, full: html, text

0a2a534d7677160cddf60fed43add246901de5e4 Thu Nov 9 14:04:32 2017 -0800

Adding a link to the original Umap repository and adding a References section. refs #19154
- src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 13, context: html, text, full: html, text

8b08b7d451c2a1901e090d10f5fd697d640f9ea5 Thu Nov 9 14:11:11 2017 -0800

Making all links open in a new tab by adding the target=_blank attribute, refs #19154
- src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 12, context: html, text, full: html, text

6b05c0697e4481ae282625070999aa5a6dba2688 Thu Nov 9 15:32:29 2017 -0800

Replacing all tabs with spaces as per code review, refs #20494
- src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

134351dc2046f8dd070558700ec41c9bd544c88a Mon Nov 13 09:39:58 2017 -0800

Fixing broken links for dp3 found by the broken link report, no Remdine
- src/hg/makeDb/trackDb/drosophila/dp3/twinscan.html - lines changed 1, context: html, text, full: html, text