e52349aa29cae89f4e9fd765da98d1a46ad2cbe9 braney Mon Nov 27 14:41:59 2017 -0800 add header for bedTabix files diff --git src/inc/bedTabix.h src/inc/bedTabix.h index e96e630..f73424a 100644 --- src/inc/bedTabix.h +++ src/inc/bedTabix.h @@ -1,27 +1,32 @@ +/* Routines for reading bedTabix formatted files. bedTabix files are bed files indexed by tabix. Indexing + * works like vcfTabix does. + * + * This file is copyright 2016 Jim Kent, but license is hereby + * granted for all use - public, private or commercial. */ #ifndef BEDTABIX_H #define BEDTABIX_H #include "linefile.h" struct bedTabixFile { struct lineFile *lf; }; struct asObject *longTabixAsObj(); struct bedTabixFile *bedTabixFileMayOpen(char *fileOrUrl, char *chrom, int start, int end); /* Open a bed file that has been compressed and indexed by tabix */ struct bedTabixFile *bedTabixFileOpen(char *fileOrUrl, char *chrom, int start, int end); /* Attempt to open bedTabix file. errAbort on failure. */ struct bed *bedTabixReadFirstBed(struct bedTabixFile *btf, char *chrom, int start, int end, struct bed * (*loadBed)()); /* Read in first bed in range (for next item).*/ struct bed *bedTabixReadBeds(struct bedTabixFile *btf, char *chromName, int winStart, int winEnd, struct bed * (*loadBed)()); /* Read in all beds in range.*/ void bedTabixFileClose(struct bedTabixFile **btf); #endif //BEDTABIX_H