22d1b7b1d2e0f48aee47675a9622e920dacadb0f
galt
Fri Jan 5 18:13:02 2018 -0800
Fixing compile errors and encoding consistency, even though this code is obsolete.
diff --git src/hg/hgCert/hgCert.c src/hg/hgCert/hgCert.c
index 380aee6..a6e42aa 100644
--- src/hg/hgCert/hgCert.c
+++ src/hg/hgCert/hgCert.c
@@ -23,88 +23,84 @@
result = strstr(line, lineType);
if (result == NULL)
{
return(result);
}
else
{
result = result + strlen(lineType);
return(result);
}
}
char *doLine2(char *lineIn, char *lineType)
{
- char *result;
char *chp;
char line[1000];
strcpy(line, lineIn);
*(line+strlen(line) - 1) = '\0';
chp = strstr(line, ":");
if (chp == NULL) return(strdup("???"));
*chp = '\0';
chp ++;
chp ++;
chp = strdup(chp);
strcpy(lineType, line);
if (strcmp(chp, " ") == 0) chp = strdup(" ");
return(chp);
}
int main(int argc, char *argv[])
{
-char **p;
-char *arg0, *infileName;
+char *infileName;
FILE *inf, *outf;
-char line[1000], line2[1000];
+char line[1000];
-char *id;
-char *chp;
char *content;
char *contact="";
char *join;
char *join1, *join2;
char *spanner,
*variation,
*variationEvidence,
*comment,
*evaluation,
*remark;
char lineType[100];
//int i,j;
if (argc != 2)
{
usage();
}
else
{
infileName = argv[1];
fprintf(stdout, "Non-standard Join Certificates\n");
- fprintf(stdout, "\n");
+ fprintf(stdout, "\n");
fprintf(stdout, "\n");
fprintf(stdout, "\n");
fprintf(stdout, "| Accession 1 | \n");
fprintf(stdout, " Accession 2 | \n");
fprintf(stdout, " Spanner | \n");
fprintf(stdout, " Variation | \n");
fprintf(stdout, " Variation Evidence | \n");
fprintf(stdout, " Comment | \n");
fprintf(stdout, " Evaluation | \n");
fprintf(stdout, " Remark | \n");
fprintf(stdout, " Contact | \n");
fprintf(stdout, " \n");