Commits for jnavarr5

v359_base to v360_preview (2017-12-18 to 2018-01-08) v360

9f1029ca3ad842029132ff9d8df91f170a6e8383 Tue Dec 19 14:32:32 2017 -0800

• Updating Accession ID on the hgGateway page for oreNil2, no Redmine.
  • src/hg/makeDb/trackDb/oreNil/oreNil2/description.html - lines changed 1, context: html, text, full: html, text

83c5e9668e55fbd9adc5699b103ecc8fee3110b6 Wed Dec 20 09:25:32 2017 -0800

• Fixing broken links found by the broken link report, no Redmine
  • src/hg/makeDb/trackDb/sgpGene.html - lines changed 2, context: html, text, full: html, text

c2e8a18d1eec89fb7247068f9443d629a8b0b186 Wed Dec 20 15:14:16 2017 -0800

• Turning on genbank updates for panPan2, refs #16036
  • src/hg/makeDb/genbank/etc/rr.dbs - lines changed 2, context: html, text, full: html, text

4fae8edf7d8618583df86033fa9644ab098229bf Wed Dec 20 16:31:35 2017 -0800

• Announcing the panPan2 assembly release, refs #16036
  • src/hg/htdocs/FAQ/FAQreleases.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/credits.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 37, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

8842557bf262d266bdc530956cdb950352f86785 Wed Jan 3 11:12:00 2018 -0800

• Fixing broken links for ci2, no Redmine.
  • src/hg/makeDb/trackDb/pubs.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/intronEst.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/refGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/xenoMrna.html - lines changed 1, context: html, text, full: html, text

20a430615d70b2e9c235b19c5512e00a97f0f924 Wed Jan 3 11:58:25 2018 -0800

• Fixing broken links for eboVir3, no Redmine.
  • src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbBcell.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbBcellNeg.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbTcellI.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbTcellII.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/muPIT.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/ncbiGenePfam.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/pdb.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spAnnot.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spMut.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spStruct.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014FixedMissense.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014PolymorphicMissense.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014SpecificSnps.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gireReferences.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patSeq.html - lines changed 2, context: html, text, full: html, text

795b40a5239dd63b93f63e5daf5b6c125eb3cb71 Wed Jan 3 16:30:05 2018 -0800

• Fixing broken links found by the broken link report for hg38, no Redmine.
  • src/hg/makeDb/trackDb/fishClones.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cnvDevDelay.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cytoBand.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/dgvPlus.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gwasCatalog.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons30way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/crispr.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gwipsvizRiboseq.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/lincRNAs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/omimDescriptionText.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/tcgaExpr.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnase.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnaseSignal.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgIkmc.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/iscaComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/omimDescriptionText.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp141.shared.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp142.shared.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp144.shared.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp146.shared.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp147.shared.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp150.shared.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/stsMap.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html - lines changed 4, context: html, text, full: html, text

14247a325d82a7e0e35fbfdb196416d3a2c5e69a Fri Jan 5 09:33:40 2018 -0800

• Fixing broken links found by the broken link report, no Redmine.
  • src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/petMar1/phastConsElements6way.html - lines changed 1, context: html, text, full: html, text

f32a2489ffb3cd1f2b169fb64c9028543c2017e7 Fri Jan 5 10:08:14 2018 -0800

• Adding the beta release tag for the Hoffman mappability tracks, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

e6494e03a164a82e735d8877dc51635a5cafd2a2 Fri Jan 5 13:56:19 2018 -0800

• Removing release tags to release the Hoffman mappability track to the RR, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

8386de0f499d3fdd24c9becc50acbef3f587ef5f Fri Jan 5 15:38:25 2018 -0800

• Fixing a typo in a track name, removing 'viewUi on', and adding the 'New' tag for the release. refs #19154
  • src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 6, context: html, text, full: html, text

6335df8abfda70e6251cef0dd5defe7be2978d90 Fri Jan 5 16:02:49 2018 -0800

• Updating the bigBedToBed and bigWigToWig commands to have the correct hgdownload links, refs #19154
  • src/hg/makeDb/trackDb/human/hg38/mappability.html - lines changed 3, context: html, text, full: html, text

0f64eb14e35556ac4a91ca3d82ea71df87149351 Fri Jan 5 16:22:17 2018 -0800

• Announcing the release of the Hoffman mappability tracks for hg38, refs #19154
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 34, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text