6a3417da58ef9207dfdad6981332a16e0e224cc8
kuhn
  Wed Jan 3 14:49:18 2018 -0800
adding 10 million size limit to namedSessionDb backup

diff --git src/utils/qa/backupCentral.csh src/utils/qa/backupCentral.csh
index 6d368e3..88d11a7 100755
--- src/utils/qa/backupCentral.csh
+++ src/utils/qa/backupCentral.csh
@@ -1,62 +1,73 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ###############################################
 # 
 #  04-09-07
 #  Robert Kuhn
 #
 #  Grab hgcentral* tables from dev, beta, rr and store as files.
 # 
 ###############################################
 
 set directory="" 
 set today=""
 set dirPath=""
 set urlPath=""
 set lastYr=""
 set devString=""
 set betaString=""
 set rrString=""
  
 if ($#argv == 0 || $#argv > 1) then
   # no command line args
   echo
   echo "  grab hgcentral* tables from dev, beta, rr and store as files."
   echo
   echo "    usage:  go"
   echo
   exit
 endif
 
 if ( "$HOST" != "hgwdev" ) then
  echo "\n error: you must run this script on dev!\n"
  exit 1
 endif
 
 set directory="hgcentral" 
 # set file paths and URLs
 # set today="2008-05-05"
 set today=`date +%Y-%m-%d`
 set dirPath="/usr/local/apache/htdocs-genecats/qa/test-results/$directory"
 rm -rf $dirPath/$today/
 mkdir -p $dirPath/$today
 set urlPath="http://genecats.cse.ucsc.edu/qa/test-results/$directory/$today"
 
 # remove last year's dir
 set lastYr=`date +%Y-%m --date='1 year  ago'`
 rm -r  $dirPath/${lastYr}*
 
 set devString="hgcentraltest"
 set betaString="-h $sqlbeta hgcentralbeta"
 set rrString="-h $sqlrr hgcentral" 
 
-foreach table ( blatServers clade dbDb dbDbArch defaultDb genomeClade \
-  liftOverChain namedSessionDb targetDb )
+# set contents field size limit to 10 million
+set sizeLimit=10000000
+foreach table ( namedSessionDb )
+  hgsql   $devString -N -e "select * from namedSessionDb where length(contents) < $sizeLimit" \
+    | sort >> $dirPath/$today/hgwdev.$table
+  hgsql  $betaString -N -e "select * from namedSessionDb where length(contents) < $sizeLimit" \
+    | sort >> $dirPath/$today/hgwbeta.$table
+  hgsql    $rrString -N -e "select * from namedSessionDb where length(contents) < $sizeLimit" \
+    | sort >> $dirPath/$today/rr.$table
+end
+
+foreach table ( blatServers clade dbDb defaultDb genomeClade liftOverChain targetDb )
   hgsql  $devString -N -e "SELECT * FROM $table" | sort >> $dirPath/$today/hgwdev.$table
   hgsql $betaString -N -e "SELECT * FROM $table" | sort >> $dirPath/$today/hgwbeta.$table
   hgsql   $rrString -N -e "SELECT * FROM $table" | sort >> $dirPath/$today/rr.$table
 end
 
+
 echo $urlPath
 chmod 650 $dirPath/$today/*.namedSessionDb