62689a652c5741683e7042e753e32389c86d7003 angie Tue Jan 9 13:40:33 2018 -0800 NCBI's latest RefSeq GFF3 now uses 'pseudogene' in some cases where it previously used 'gene'; treat it the same as before. refs #20108 note-18 diff --git src/inc/gff3.h src/inc/gff3.h index 469dc34..d6d66a7 100644 --- src/inc/gff3.h +++ src/inc/gff3.h @@ -198,30 +198,31 @@ /* standard attribute tags */ extern char *gff3AttrID; extern char *gff3AttrName; extern char *gff3AttrAlias; extern char *gff3AttrParent; extern char *gff3AttrTarget; extern char *gff3AttrGap; extern char *gff3AttrDerivesFrom; extern char *gff3AttrNote; extern char *gff3AttrDbxref; extern char *gff3AttrOntologyTerm; /* commonly used features names */ extern char *gff3FeatGene; +extern char *gff3FeatPseudogene; extern char *gff3FeatMRna; extern char *gff3FeatNCRna; extern char *gff3FeatRRna; extern char *gff3FeatTRna; extern char *gff3FeatExon; extern char *gff3FeatCDS; extern char *gff3FeatThreePrimeUTR; extern char *gff3FeatFivePrimeUTR; extern char *gff3FeatStartCodon; extern char *gff3FeatStopCodon; extern char *gff3FeatTranscript; extern char *gff3FeatPrimaryTranscript; extern char *gff3FeatVGeneSegment; struct gff3File *gff3FileOpen(char *fileName, int maxErr, FILE *errFh);