71f07bcffb4709109d882b2faac5d1811e34040a hiram Thu Jan 11 11:26:32 2018 -0800 adding cavApe1 and fukDam1 Brazilian guinea pig and Damara mole-rat refs #20770 #20752 diff --git src/hg/js/dbDbTaxonomy.js src/hg/js/dbDbTaxonomy.js index 896d685..5dc33e5 100644 --- src/hg/js/dbDbTaxonomy.js +++ src/hg/js/dbDbTaxonomy.js @@ -134,35 +134,38 @@ [ ["Spalacinae", 10061, null, [ ["Nannospalax", 30636, null, [ ["Upper Galilee mountains blind mole rat", 1026970, "Nannospalax galili" ] ] ] ] ] ] ] ] ], ["Dipodoidea", 1963761, null, [ ["Dipodidae", 30648, null, [ ["Dipodinae", 35737, null, [ ["Jaculus", 48867, null, [ ["Lesser Egyptian jerboa", 51337, "Jaculus jaculus" ] ] ] ] ] ] ] ] ] ] ], ["Castorimorpha", 1963757, null, [ ["Heteromyidae", 10015, null, [ ["Dipodomyinae", 38662, null, [ ["Dipodomys", 10016, null, [ ["Kangaroo rat", 10020, "Dipodomys ordii" ] ] ] ] ] ] ] ] ], ["Hystricomorpha", 33550, null, [ ["Bathyergidae", 10167, null, - [ ["Heterocephalus", 10180, null, + [ ["Fukomys", 423606, null, + [ ["Damara mole rat", 885580, "Fukomys damarensis" ] ] ], + ["Heterocephalus", 10180, null, [ ["Naked mole-rat", 10181, "Heterocephalus glaber" ] ] ] ] ], ["Caviidae", 10139, null, [ ["Cavia", 10140, null, - [ ["Guinea pig", 10141, "Cavia porcellus" ] ] ] ] ], + [ ["Brazilian guinea pig", 37548, "Cavia aperea" ], + ["Guinea pig", 10141, "Cavia porcellus" ] ] ] ] ], ["Chinchillidae", 10150, null, [ ["Chinchilla", 10151, null, [ ["Chinchilla", 34839, "Chinchilla lanigera" ] ] ] ] ], ["Octodontidae", 10158, null, [ ["Octodon", 10159, null, [ ["Brush-tailed rat", 10160, "Octodon degus" ] ] ] ] ] ] ], ["Sciuromorpha", 33553, null, [ ["Sciuridae", 55153, null, [ ["Xerinae", 337726, null, [ ["Marmotini", 337730, null, [ ["Ictidomys", 1141640, null, [ ["Squirrel", 43179, "Ictidomys tridecemlineatus" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Lagomorpha", 9975, null, [ ["Leporidae", 9979, null, [ ["Oryctolagus", 9984, null, @@ -390,32 +393,33 @@ [ ["Neognathae", 8825, null, [ ["Galloanserae", 1549675, null, [ ["Galliformes", 8976, null, [ ["Phasianidae", 9005, null, [ ["Phasianinae", 9072, null, [ ["Gallus", 9030, null, [ ["Chicken", 9031, "Gallus gallus" ] ] ] ] ], ["Meleagridinae", 466552, null, [ ["Meleagris", 9102, null, [ ["Turkey", 9103, "Meleagris gallopavo" ] ] ] ] ], ["Perdicinae", 466544, null, [ ["Coturnix", 9090, null, [ ["Japanese quail", 93934, "Coturnix japonica" ] ] ] ] ] ] ] ] ], ["Anseriformes", 8826, null, [ ["Anatidae", 8830, null, + [ ["Anatinae", 2068716, null, [ ["Anas", 8835, null, - [ ["Mallard duck", 8839, "Anas platyrhynchos" ] ] ] ] ] ] ] ] ], + [ ["Mallard duck", 8839, "Anas platyrhynchos" ] ] ] ] ] ] ] ] ] ] ], ["Bucerotiformes", 57379, null, [ ["Bucerotidae", 57380, null, [ ["Buceros", 175829, null, [ ["Buceros rhinoceros", 175835, null, [ ["Rhinoceros hornbill", 175836, "Buceros rhinoceros silvestris" ] ] ] ] ] ] ] ] ], ["Caprimulgiformes", 8902, null, [ ["Caprimulgidae", 48283, null, [ ["Antrostomus", 1854010, null, [ ["Chuck-will's-widow", 279965, "Antrostomus carolinensis" ] ] ] ] ] ] ], ["Cariamiformes", 1956187, null, [ ["Cariamidae", 54378, null, [ ["Cariama", 54379, null, [ ["Red-legged seriema", 54380, "Cariama cristata" ] ] ] ] ] ] ], ["Charadriiformes", 8906, null, [ ["Charadriidae", 8907, null, @@ -918,31 +922,32 @@ [ ["Muscidae", 7366, null, [ ["Muscinae", 43910, null, [ ["Muscini", 57894, null, [ ["Musca", 7369, null, [ ["Musca", 44052, null, [ ["M. domestica", 7370, "Musca domestica" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Nematocera", 7148, null, [ ["Culicomorpha", 43786, null, [ ["Culicoidea", 41827, null, [ ["Culicidae", 7157, null, [ ["Anophelinae", 43816, null, [ ["Anopheles", 7164, null, [ ["Cellia", 44534, null, [ ["Pyretophorus", 44537, null, [ ["gambiae species complex", 44542, null, - [ ["A. gambiae", 7165, "Anopheles gambiae" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], + [ ["A. gambiae", 7165, "Anopheles gambiae", + [ ["A. gambiae", 180454, "Anopheles gambiae str. PEST" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Coleoptera", 7041, null, [ ["Polyphaga", 41084, null, [ ["Cucujiformia", 41088, null, [ ["Tenebrionoidea", 71527, null, [ ["Tenebrionidae", 7065, null, [ ["Tenebrionidae incertae sedis", 1304792, null, [ ["Tribolium", 7069, null, [ ["T. castaneum", 7070, "Tribolium castaneum" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Hymenoptera", 7399, null, [ ["Apocrita", 7400, null, [ ["Aculeata", 7434, null, [ ["Apoidea", 34735, null, [ ["Apidae", 7458, null, [ ["Apinae", 70987, null, [ ["Apini", 83321, null, @@ -1014,31 +1019,31 @@ [ ["Aphelenchina", 1182516, null, [ ["Aphelenchoidea", 120862, null, [ ["Aphelenchoididae", 33823, null, [ ["Bursaphelenchus", 6324, null, [ ["Pine wood nematode", 6326, "Bursaphelenchus xylophilus" ] ] ] ] ] ] ] ] ], ["Tylenchina", 33283, null, [ ["Tylenchoidea", 33284, null, [ ["Meloidogynidae", 315429, null, [ ["Meloidogyninae", 33285, null, [ ["Meloidogyne", 189290, null, [ ["M. hapla", 6305, "Meloidogyne hapla" ], ["Meloidogyne incognita group", 654580, null, [ ["M. incognita", 6306, "Meloidogyne incognita" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Enoplea", 119088, null, [ ["Dorylaimia", 1457286, null, - [ ["Trichocephalida", 6329, null, + [ ["Trichinellida", 6329, null, [ ["Trichinellidae", 6332, null, [ ["Trichinella", 6333, null, [ ["Trichinella", 6334, "Trichinella spiralis" ] ] ] ] ], ["Trichuridae", 119093, null, [ ["Trichuris", 36086, null, [ ["Whipworm", 68888, "Trichuris suis" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Lophotrochozoa", 1206795, null, [ ["Mollusca", 6447, null, [ ["Gastropoda", 6448, null, [ ["Heterobranchia", 216305, null, [ ["Euthyneura", 216307, null, [ ["Euopisthobranchia", 6496, null, [ ["Aplysiomorpha", 6497, null, [ ["Aplysioidea", 216318, null, [ ["Aplysiidae", 6498, null, @@ -1104,30 +1109,30 @@ [ ["Mononegavirales", 11157, null, [ ["Filoviridae", 11266, null, [ ["Ebolavirus", 186536, null, [ ["Ebola virus", 186538, "Zaire ebolavirus" ], ["Bundibugyo ebolavirus", 565995, "Bundibugyo ebolavirus" ], ["Reston ebolavirus", 186539, "Reston ebolavirus" ], ["Sudan ebolavirus", 186540, "Sudan ebolavirus" ], ["Tai forest ebolavirus", 186541, "Tai Forest ebolavirus" ] ] ], ["Marburgvirus", 186537, null, [ ["Marburg virus", 11269, "Marburg marburgvirus" ] ] ] ] ] ] ] ] ], ["ssRNA positive-strand viruses, no DNA stage", 35278, null, [ ["Nidovirales", 76804, null, [ ["Coronaviridae", 11118, null, [ ["Coronavirinae", 693995, null, [ ["Betacoronavirus", 694002, null, - [ ["SARS-related coronavirus", 694009, null, + [ ["Severe acute respiratory syndrome-related coronavirus", 694009, null, [ ["SARS coronavirus", 227859, "SARS coronavirus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Retro-transcribing viruses", 35268, null, [ ["Hepadnaviridae", 10404, null, [ ["Orthohepadnavirus", 10405, null, [ ["Hbv", 10407, "Hepatitis B virus" ] ] ] ] ], ["Retroviridae", 11632, null, [ ["Orthoretrovirinae", 327045, null, [ ["Betaretrovirus", 140052, null, [ ["MMTV", 11757, "Mouse mammary tumor virus" ] ] ] ] ] ] ] ] ], ["dsDNA viruses, no RNA stage", 35237, null, [ ["Papillomaviridae", 151340, null, [ ["Alphapapillomavirus", 333750, null, [ ["Alphapapillomavirus 14", 931244, null, [ ["Hpv", 333769, "Human papillomavirus type 90" ] ] ] ] ] ] ] ] ] ] ] ] ];