2797186e7d69a8b79b92e30118bed55548f04caf
hiram
  Thu Feb 8 14:39:16 2018 -0800
adding externalId column to ncbiRefSeqLink table refs #20215

diff --git src/hg/inc/ncbiRefSeqLink.h src/hg/inc/ncbiRefSeqLink.h
index 2d15a8a..a8ef136 100644
--- src/hg/inc/ncbiRefSeqLink.h
+++ src/hg/inc/ncbiRefSeqLink.h
@@ -1,48 +1,49 @@
 /* ncbiRefSeqLink.h was originally generated by the autoSql program, which also 
  * generated ncbiRefSeqLink.c and ncbiRefSeqLink.sql.  This header links the database and
  * the RAM representation of objects. */
 
 #ifndef NCBIREFSEQLINK_H
 #define NCBIREFSEQLINK_H
 
-#define NCBIREFSEQLINK_NUM_COLS 18
+#define NCBIREFSEQLINK_NUM_COLS 19
 
 extern char *ncbiRefSeqLinkCommaSepFieldNames;
 
 struct ncbiRefSeqLink
 /* Metadata for NCBI RefSeq tracks */
     {
     struct ncbiRefSeqLink *next;  /* Next in singly linked list. */
     char *id;	/* id for this gene or curated item */
-    char *status;	/* Inferrred, Model, Predicted, Provisional, Reviewed, Validated, Unknown */
+    char *status;	/* Inferred, Model, Predicted, Provisional, Reviewed, Validated, Unknown */
     char *name;	/* gene name */
     char *product;	/* product */
     char *mrnaAcc;	/* transcript_id */
     char *protAcc;	/* protein_id */
     char *locusLinkId;	/* locus link identifier, from Dbxref */
-    char *omimId;	/* omim identifier, from Dbxref */
+    char *omimId;	/* OMIM identifier, from Dbxref */
     char *hgnc;	/* HGNC identifier, from Dbxref */
     char *genbank;	/* genbank identifier from Dbxref */
     char *pseudo;	/* 'true' if pseudo gene, or n/a */
     char *gbkey;	/* genbank key: Gene, mRNA, ncRNA, rRNA, tRNA, etc... */
     char *source;	/* source: RefSeq, tRNAscan-SE, Gnomon, Curated Genomic, BestRefSeq */
     char *gene_biotype;	/* bio type: protein_coding, pseudogene, C_region, J_segment_pseudogene, other */
     char *gene_synonym;	/* list of synonym names */
     char *ncrna_class;	/* type of RNA: miRNA, lncRNA, snoRNA, etc... */
     char *note;	/* other notes from genbank record */
     char *description;	/* description from rna gbff record via gbProcess */
+    char *externalId;	/* for outside URL link, WormBase, FlyBase, RGD, SGD, etc... from Dbxref */
     };
 
 void ncbiRefSeqLinkStaticLoad(char **row, struct ncbiRefSeqLink *ret);
 /* Load a row from ncbiRefSeqLink table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct ncbiRefSeqLink *ncbiRefSeqLinkLoad(char **row);
 /* Load a ncbiRefSeqLink from row fetched with select * from ncbiRefSeqLink
  * from database.  Dispose of this with ncbiRefSeqLinkFree(). */
 
 struct ncbiRefSeqLink *ncbiRefSeqLinkLoadAll(char *fileName);
 /* Load all ncbiRefSeqLink from whitespace-separated file.
  * Dispose of this with ncbiRefSeqLinkFreeList(). */
 
 struct ncbiRefSeqLink *ncbiRefSeqLinkLoadAllByChar(char *fileName, char chopper);