2797186e7d69a8b79b92e30118bed55548f04caf hiram Thu Feb 8 14:39:16 2018 -0800 adding externalId column to ncbiRefSeqLink table refs #20215 diff --git src/hg/lib/ncbiRefSeqLink.sql src/hg/lib/ncbiRefSeqLink.sql index d79f553..f3944f2 100644 --- src/hg/lib/ncbiRefSeqLink.sql +++ src/hg/lib/ncbiRefSeqLink.sql @@ -11,21 +11,22 @@ product varchar(255) not null, # product mrnaAcc varchar(255) not null, # transcript_id protAcc varchar(255) not null, # protein_id locusLinkId varchar(255) not null, # locus link identifier, from Dbxref omimId varchar(255) not null, # OMIM identifier, from Dbxref hgnc varchar(255) not null, # HGNC identifier, from Dbxref genbank varchar(255) not null, # genbank identifier from Dbxref pseudo varchar(255) not null, # 'true' if pseudo gene, or n/a gbkey varchar(255) not null, # genbank key: Gene, mRNA, ncRNA, rRNA, tRNA, etc... source varchar(255) not null, # source: RefSeq, tRNAscan-SE, Gnomon, Curated Genomic, BestRefSeq gene_biotype varchar(255) not null, # bio type: protein_coding, pseudogene, C_region, J_segment_pseudogene, other gene_synonym varchar(255) not null, # list of synonym names ncrna_class varchar(255) not null, # type of RNA: miRNA, lncRNA, snoRNA, etc... note longblob not null, # other notes from genbank record description longblob not null, # description from rna gbff record via gbProcess + externalId varchar(255) not null, # for outside URL link, WormBase, FlyBase, RGD, SGD, etc... from Dbxref #Indices PRIMARY KEY(id), index(name), index(mrnaAcc), index(protAcc) );