2797186e7d69a8b79b92e30118bed55548f04caf hiram Thu Feb 8 14:39:16 2018 -0800 adding externalId column to ncbiRefSeqLink table refs #20215 diff --git src/hg/lib/ncbiRefSeqLink.as src/hg/lib/ncbiRefSeqLink.as index 3c70709..9ab0972 100644 --- src/hg/lib/ncbiRefSeqLink.as +++ src/hg/lib/ncbiRefSeqLink.as @@ -1,22 +1,23 @@ table ncbiRefSeqLink "Metadata for NCBI RefSeq tracks" ( string id; "id for this gene or curated item" string status; "Inferred, Model, Predicted, Provisional, Reviewed, Validated, Unknown" string name; "gene name" string product; "product" string mrnaAcc; "transcript_id" string protAcc; "protein_id" string locusLinkId; "locus link identifier, from Dbxref" string omimId; "OMIM identifier, from Dbxref" - string hgnc; "HGNC identifier (or MGI for mouse), from Dbxref" + string hgnc; "HGNC identifier, from Dbxref" string genbank; "genbank identifier from Dbxref" string pseudo; "'true' if pseudo gene, or n/a" string gbkey; "genbank key: Gene, mRNA, ncRNA, rRNA, tRNA, etc..." string source; "source: RefSeq, tRNAscan-SE, Gnomon, Curated Genomic, BestRefSeq" string gene_biotype; "bio type: protein_coding, pseudogene, C_region, J_segment_pseudogene, other" string gene_synonym; "list of synonym names" string ncrna_class; "type of RNA: miRNA, lncRNA, snoRNA, etc..." lstring note; "other notes from genbank record" lstring description; "description from rna gbff record via gbProcess" + string externalId; "for outside URL link, WormBase, FlyBase, RGD, SGD, etc... from Dbxref" )