Commits for galt

v360_base to v361_preview (2018-01-22 to 2018-01-29) v361

14f4d515795bfc338d059ad87a58c9ad9d6fbbee Wed Jan 24 16:09:23 2018 -0800

• Utility to convert utf8 chars to latin1. Not currently in use.
  • src/hg/oneShot/galtFixUtf8Chars/README - lines changed 26, context: html, text, full: html, text
  • src/hg/oneShot/galtFixUtf8Chars/galtFixUtf8Chars.c - lines changed 424, context: html, text, full: html, text
  • src/hg/oneShot/galtFixUtf8Chars/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/oneShot/galtFixUtf8Chars/userName.log - lines changed 588, context: html, text, full: html, text
  • src/hg/oneShot/galtFixUtf8Chars/utf8.text - lines changed 128, context: html, text, full: html, text
  • src/hg/oneShot/galtFixUtf8Chars/win1252.text - lines changed 128, context: html, text, full: html, text

1f55f129858863d78076fd3818d3841429741121 Mon Jan 29 01:35:45 2018 -0800

• Fixing bug: sqlDyStringAppend() is not safe, and it is not needed. Using sqlDyStringPrintf instead.
  • src/hg/autoSql/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/autoSql/tests/testSymCols.c - lines changed 1, context: html, text, full: html, text
  • src/hg/bioImage/bioImageLoad/bioImageLoad.c - lines changed 26, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c - lines changed 6, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 26, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 3, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 26, context: html, text, full: html, text
  • src/hg/gisaid/gisaidTable/gisaidSubjInfo.c - lines changed 9, context: html, text, full: html, text
  • src/hg/gisaid/gisaidTable/gisaidTable.c - lines changed 5, context: html, text, full: html, text
  • src/hg/gsid/gsidMember/gsidMember.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidTable/gsidSubjInfo.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
  • src/hg/inc/jksql.h - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/annoStreamDb.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hgFind.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/jksql.c - lines changed 16, context: html, text, full: html, text
  • src/hg/lib/spDb.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/sqlCheck.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/visiGene.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbLoadRna.c - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbSql.c - lines changed 4, context: html, text, full: html, text
  • src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c - lines changed 5, context: html, text, full: html, text
  • src/hg/visiGene/hgVisiGene/visiSearch.c - lines changed 7, context: html, text, full: html, text
  • src/hg/visiGene/vgChangeContributors/vgChangeContributors.c - lines changed 5, context: html, text, full: html, text
  • src/hg/visiGene/vgLoadJax/vgLoadJax.c - lines changed 5, context: html, text, full: html, text
  • src/hg/visiGene/vgProbeTrack/vgProbeTrack.c - lines changed 64, context: html, text, full: html, text
  • src/hg/visiGene/vgRemoveSubmission/vgRemoveSubmission.c - lines changed 7, context: html, text, full: html, text
  • src/hg/visiGene/visiGeneLoad/visiGeneLoad.c - lines changed 168, context: html, text, full: html, text

a3b2294493e8cd9cd4721072fcd3f3919b482ec6 Mon Jan 29 01:44:07 2018 -0800

• making safer sql query strings.
  • src/hg/lib/facetField.c - lines changed 4, context: html, text, full: html, text

adc1d88ffc7851fd45b13c2fe8f78ac091634a87 Mon Jan 29 02:22:42 2018 -0800

• Cleaning up sql for safer usage to avoid injection.
  • src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 3, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwRunOnIds/cdwRunOnIds.c - lines changed 2, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c - lines changed 3, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 11, context: html, text, full: html, text