Commits for jnavarr5

v360_base to v361_preview (2018-01-22 to 2018-01-29) v361

d33573b77dda431383fb63411682c6c3f8e41b3c Mon Jan 22 12:05:31 2018 -0800

• Fixing broken links for dm1, no Redmine.
  • src/hg/makeDb/trackDb/blatFugu.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/anophelesEcores.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/flyreg.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/pscreen.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/mzDy1Dp2Ag1_phast.html - lines changed 4, context: html, text, full: html, text

2afd38725a11a00b29f6b23053054d629662ff34 Tue Jan 23 10:08:26 2018 -0800

• Fixing broken links for danRer4, no Redmine.
  • src/hg/makeDb/trackDb/contrastGene.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/bacEndPairs.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/bacEndSingles.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/ctgPos2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/gold.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/multiz7way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer4/rhMap.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html - lines changed 7, context: html, text, full: html, text

5ab5093438cc4105ae0d9fd56d4ffcb0cc7666c2 Wed Jan 24 04:42:14 2018 -0800

• Merge branches 'master', 'master' and 'master' of hgwdev.cse.ucsc.edu:/data/git/kent

99b28beeb1d3a1edd69d53c952d26ade867e0b33 Thu Jan 25 14:46:48 2018 -0800

• Fixing broken links found by the broken link report, no Redmine.
  • src/hg/makeDb/trackDb/cgapSage.html - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cpgIslandSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fosEndPairs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/genscan.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/HInvGeneMrna.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/affyU133Plus2.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/darned.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/decodeRmap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/eioJcviNAS.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeRegions.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/evofold.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gad.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hapmapSnps.html - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/acembly.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/affyExonArray.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/allHg19RS_BW.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/burgeRnaSeqGemMapperAlign.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons46way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/consIndelsHgMmCanFam.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/crispr.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcBamDenisova.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcHumDerDenAnc.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcVcfDenisovaPinky.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcVcfModern.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/evsEsp6500.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/exac.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genomicSuperDups.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gwipsvizRiboseq.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/hinv70Composite.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGene.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/numtSeqHg19.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pgSnp.html - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pseudoYale60.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/targetScanS.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tfbsConsSites.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase1.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase1Accessibility.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase3.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase3Accessibility.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/uMassBrainHistone.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/ucscRetroAli5.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/vegaGeneComposite.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseUniform.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgSegmentation.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release4.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeChromSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDNAseSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDnaMethylSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeExonArraySuper.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.release2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV24lift37.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHistoneSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeProtGenoSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRbpSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegDnaseClusteredV3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClustered.release2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSeqSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.patch.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeTfBindingSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release4.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgRna.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgIkmc.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgdpGeo.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgmd.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hiSeqDepth.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/iscaComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/laminB1Super.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lovd.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ntHumChimpCodingDiff.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ntOoaHaplo.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ntSssTop5p.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ntSssZScorePMVar.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/numtSeq.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/omimGene2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/omimLocation.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/phastBias.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/polyA.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/rgdQtl.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp141.shared.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp142.shared.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp144.shared.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp146.shared.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp147.shared.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp150.shared.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ucsfBrainMethyl.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/vistaEnhancers.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/jaxQtlMapped.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/nestedRepeats.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ntSeqReads.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/recombRate.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rgdRatQtl.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rmsk.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tRNAs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html - lines changed 1, context: html, text, full: html, text

02df6896714390d5c118357c94c60bf4b2d2f9be Thu Jan 25 14:51:26 2018 -0800

• Fixing broken links found by the broken link report, no Redmine.
  • src/hg/makeDb/trackDb/blastHg18KG.html - lines changed 1, context: html, text, full: html, text

193503db3f8e682b6c33840fa9ecd04f6575fcb5 Fri Jan 26 09:01:13 2018 -0800

• Fixing broken links for monDom5, no Redmine.
  • src/hg/makeDb/trackDb/chainNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html - lines changed 4, context: html, text, full: html, text