File Changes for markd

v360_base to v361_preview (2018-01-22 to 2018-01-29) v361

• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 111, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
  • lines changed 12, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/hg/utils/gff3ToGenePred/tests/expected/ncbiSegmentsTest.attrs
  • lines changed 77, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
  • lines changed 194, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/hg/utils/gff3ToGenePred/tests/expected/ncbiSegmentsTest.gp
  • lines changed 6, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
  • lines changed 14, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/hg/utils/gff3ToGenePred/tests/expected/ncbiSegmentsTest.out
  • lines changed 12, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/hg/utils/gff3ToGenePred/tests/input/ncbiSegments.gff3
  • lines changed 35, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
  • lines changed 89, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/hg/utils/gff3ToGenePred/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
  • lines changed 2, context: html, text, full: html, text
    c38255cd365b9742bf47b39954cbd26770bef21f Thu Jan 25 17:29:09 2018 -0800
    changed handling of previous change NCBI immuno segments to just discard the gene-level CDS, as moving them to the transcript level brought out CDS/exon inconsitencies in the NCBI human and mouse files
• src/inc/gff3.h
  • lines changed 12, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats
• src/lib/gff3.c
  • lines changed 30, context: html, text, full: html, text
    03d79bf4ff976c1c0f7327d91e8b9d9adc70cefd Tue Jan 23 21:55:36 2018 -0800
    do a better job converting NCBI [CDJV]_gene_segment GFF3 annotations. This avoids split into genePreds. Another evening wasted with bioinformatics file formats