Commits for markd

v363_preview2 to v363_base (2018-03-19 to 2018-03-26) v363

6b82df9c93a5eeb2447321098de0f570673ededd Mon Mar 19 21:12:42 2018 -0700

• Added search for gencode proteinId. This was done by updating the program that generates the gencode trackDb ra and html files. The way the contitional text generation was done had gotten error prone, so it was restructed. The change isn't as drastic as it looks. The results were compared to the old ra files to make sure there changes were what was expected. RM21077
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs - lines changed 964, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV27.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV27.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM16.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM16.ra - lines changed 32, context: html, text, full: html, text

29ee334981ae71d1c4caefcd64f0db3ec26f7547 Thu Mar 22 18:04:50 2018 -0700

• add support to using gencode gene id in all gencode track (rm21157)
  • src/hg/hgTracks/gencodeTracks.c - lines changed 230, context: html, text, full: html, text
  • src/hg/inc/encode/wgEncodeGencodeAttrs.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 33, context: html, text, full: html, text

c4f955645d376e77f358e545b36fbdefdc8ab8ce Thu Mar 22 18:19:49 2018 -0700

• make sure gencode label is set on first switch from old cart (rm21157)
  • src/hg/hgTracks/gencodeTracks.c - lines changed 10, context: html, text, full: html, text