c2c780666cf30f764fe4eb81b7fad350b0a7391a
kate
Thu Mar 8 15:56:39 2018 -0800
Add trackDb setting to indicate if there is a direction to the interaction (interactDirectional). refs #17512
diff --git src/hg/hgc/interactClick.c src/hg/hgc/interactClick.c
index e9b5b38..a65a7ca0 100644
--- src/hg/hgc/interactClick.c
+++ src/hg/hgc/interactClick.c
@@ -104,39 +104,71 @@
{
sprintLongWithCommas(startBuf, inter->chromStart+1);
sprintLongWithCommas(endBuf, inter->chromEnd);
sprintLongWithCommas(sizeBuf, inter->chromEnd - inter->chromStart);
printf("%s:%s-%s",
inter->chrom, inter->chromStart, inter->chromEnd,
inter->chrom, startBuf, endBuf);
printf(" %s bp
\n", sizeBuf);
}
printf("Score: %d
\n", inter->score);
printf("Value: %0.3f
\n", inter->value);
if (isNotEmpty(inter->exp))
printf("Experiment: %s
\n", inter->exp);
puts("
");
-sprintLongWithCommas(startBuf, inter->sourceStart+1);
-sprintLongWithCommas(endBuf, inter->sourceEnd);
-sprintLongWithCommas(sizeBuf, inter->sourceEnd - inter->sourceStart);
-// TODO: Change labels if non-directional
-printf("Source region: %s "
+/* print info for both regions */
+/* Use different labels:
+ 1) directional (source/target)
+ 2) non-directional same chrom (lower/upper)
+ 3) non-directional other chrom (this/other)
+*/
+char *region1Label = "Source";
+char *region1Chrom = inter->sourceChrom;
+int region1Start = inter->sourceStart;
+int region1End = inter->sourceEnd;
+char *region1Name = inter->sourceName;
+
+char *region2Label = "Target";
+char *region2Chrom = inter->targetChrom;
+int region2Start = inter->targetStart;
+int region2End = inter->targetEnd;
+char *region2Name = inter->targetName;
+
+if (!interactUiDirectional(tdb))
+ {
+ if (interactOtherChrom(inter))
+ {
+ region1Label = "This";
+ region2Label = "Other";
+ }
+ else
+ {
+ region1Label = "Lower";
+ region2Label = "Upper";
+ }
+ }
+
+sprintLongWithCommas(startBuf, region1Start + 1);
+sprintLongWithCommas(endBuf, region1End);
+sprintLongWithCommas(sizeBuf, region1End - region1Start);
+printf("%s region: %s "
"%s:%s-%s",
- inter->sourceName, inter->sourceChrom, inter->sourceStart+1, inter->sourceEnd,
- inter->sourceChrom, startBuf, endBuf);
+ region1Label, region1Name, region1Chrom, region1Start+1, region1End,
+ region1Chrom, startBuf, endBuf);
printf(" %s bp
\n", sizeBuf);
-sprintLongWithCommas(startBuf, inter->targetStart+1);
-sprintLongWithCommas(endBuf, inter->targetEnd);
-sprintLongWithCommas(sizeBuf, inter->targetEnd - inter->targetStart);
-printf("Target region: %s "
+
+sprintLongWithCommas(startBuf, region2Start+1);
+sprintLongWithCommas(endBuf, region2End);
+sprintLongWithCommas(sizeBuf, region2End - region2Start);
+printf("%s region: %s "
"%s:%s-%s",
- inter->targetName, inter->targetChrom, inter->targetStart+1, inter->targetEnd,
- inter->targetChrom, startBuf, endBuf);
+ region2Label, region2Name, region2Chrom, region2Start+1, region2End,
+ region2Chrom, startBuf, endBuf);
printf(" %s bp
\n", sizeBuf);
-#ifdef TODO
-/* TODO: get count and score stats of all interactions in window ?*/
+
+#ifdef TODO /* TODO: get count and score stats of all interactions in window ?*/
double *scores;
AllocArray(scores, count);
#endif
}