c2c780666cf30f764fe4eb81b7fad350b0a7391a kate Thu Mar 8 15:56:39 2018 -0800 Add trackDb setting to indicate if there is a direction to the interaction (interactDirectional). refs #17512 diff --git src/hg/hgc/interactClick.c src/hg/hgc/interactClick.c index e9b5b38..a65a7ca0 100644 --- src/hg/hgc/interactClick.c +++ src/hg/hgc/interactClick.c @@ -104,39 +104,71 @@ { sprintLongWithCommas(startBuf, inter->chromStart+1); sprintLongWithCommas(endBuf, inter->chromEnd); sprintLongWithCommas(sizeBuf, inter->chromEnd - inter->chromStart); printf("<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a>", inter->chrom, inter->chromStart, inter->chromEnd, inter->chrom, startBuf, endBuf); printf(" %s bp<br>\n", sizeBuf); } printf("<b>Score:</b> %d<br>\n", inter->score); printf("<b>Value:</b> %0.3f<br>\n", inter->value); if (isNotEmpty(inter->exp)) printf("<b>Experiment:</b> %s<br>\n", inter->exp); puts("<p>"); -sprintLongWithCommas(startBuf, inter->sourceStart+1); -sprintLongWithCommas(endBuf, inter->sourceEnd); -sprintLongWithCommas(sizeBuf, inter->sourceEnd - inter->sourceStart); -// TODO: Change labels if non-directional -printf("<b>Source region:</b> %s " +/* print info for both regions */ +/* Use different labels: + 1) directional (source/target) + 2) non-directional same chrom (lower/upper) + 3) non-directional other chrom (this/other) +*/ +char *region1Label = "Source"; +char *region1Chrom = inter->sourceChrom; +int region1Start = inter->sourceStart; +int region1End = inter->sourceEnd; +char *region1Name = inter->sourceName; + +char *region2Label = "Target"; +char *region2Chrom = inter->targetChrom; +int region2Start = inter->targetStart; +int region2End = inter->targetEnd; +char *region2Name = inter->targetName; + +if (!interactUiDirectional(tdb)) + { + if (interactOtherChrom(inter)) + { + region1Label = "This"; + region2Label = "Other"; + } + else + { + region1Label = "Lower"; + region2Label = "Upper"; + } + } + +sprintLongWithCommas(startBuf, region1Start + 1); +sprintLongWithCommas(endBuf, region1End); +sprintLongWithCommas(sizeBuf, region1End - region1Start); +printf("<b>%s region:</b> %s " "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a>", - inter->sourceName, inter->sourceChrom, inter->sourceStart+1, inter->sourceEnd, - inter->sourceChrom, startBuf, endBuf); + region1Label, region1Name, region1Chrom, region1Start+1, region1End, + region1Chrom, startBuf, endBuf); printf(" %s bp<br>\n", sizeBuf); -sprintLongWithCommas(startBuf, inter->targetStart+1); -sprintLongWithCommas(endBuf, inter->targetEnd); -sprintLongWithCommas(sizeBuf, inter->targetEnd - inter->targetStart); -printf("<b>Target region:</b> %s " + +sprintLongWithCommas(startBuf, region2Start+1); +sprintLongWithCommas(endBuf, region2End); +sprintLongWithCommas(sizeBuf, region2End - region2Start); +printf("<b>%s region:</b> %s " "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a>", - inter->targetName, inter->targetChrom, inter->targetStart+1, inter->targetEnd, - inter->targetChrom, startBuf, endBuf); + region2Label, region2Name, region2Chrom, region2Start+1, region2End, + region2Chrom, startBuf, endBuf); printf(" %s bp<br>\n", sizeBuf); -#ifdef TODO -/* TODO: get count and score stats of all interactions in window ?*/ + +#ifdef TODO /* TODO: get count and score stats of all interactions in window ?*/ double *scores; AllocArray(scores, count); #endif }