a0d13c768fa16b3baf5f6c50babff087f13b1421
angie
  Wed Mar 14 17:06:27 2018 -0700
Use wgEncodeGencodeCompV* for ENS* searches, not just the Basic subset.  refs #21076

diff --git src/hg/lib/hgHgvs.c src/hg/lib/hgHgvs.c
index ef8889b..c26718f 100644
--- src/hg/lib/hgHgvs.c
+++ src/hg/lib/hgHgvs.c
@@ -759,35 +759,35 @@
 char *txAcc = NULL;
 struct sqlConnection *conn = hAllocConn(db);
 char *attrsTable = hFindLatestGencodeTableConn(conn, "Attrs");
 if (attrsTable && hHasField(db, attrsTable, "proteinId"))
     {
     char query[2048];
     sqlSafef(query, sizeof(query), "select transcriptId from %s where proteinId = '%s'",
              attrsTable, protAcc);
     txAcc = sqlQuickString(conn, query);
     }
 hFreeConn(&conn);
 return txAcc;
 }
 
 static struct genePred *getGencodeGp(char *db, char *acc)
-/* Return the genePred for acc in the latest wgEncodeGencodeBasicV* table, or NULL if not found. */
+/* Return the genePred for acc in the latest wgEncodeGencodeCompV* table, or NULL if not found. */
 {
 struct genePred *gp = NULL;
 struct sqlConnection *conn = hAllocConn(db);
-char *gencodeTable = hFindLatestGencodeTableConn(conn, "Basic");
+char *gencodeTable = hFindLatestGencodeTableConn(conn, "Comp");
 if (gencodeTable)
     {
     int hasBin = 1;
     char query[2048];
     sqlSafef(query, sizeof(query), "select * from %s where name = '%s'", gencodeTable, acc);
     struct sqlResult *sr = sqlGetResult(conn, query);
     char **row;
     if ((row = sqlNextRow(sr)) != NULL)
         gp = genePredExtLoad(row+hasBin, GENEPREDX_NUM_COLS);
     sqlFreeResult(&sr);
     }
 hFreeConn(&conn);
 return gp;
 }
 
@@ -1852,31 +1852,31 @@
 cds->start = cds->end = -1;
 cds->startComplete = cds->endComplete = cds->complement = FALSE;
 char *acc = *pAcc;
 if (startsWith("ENS", acc))
     {
     struct genePred *gp = getGencodeGp(db, acc);
     if (gp)
         {
         int qSize = 0; // infer -- no polyAs in Gencode because it's genome-based
         txAli = genePredToPsl(gp, hChromSize(db, gp->chrom), qSize);
         genePredToCds(gp, cds);
         if (retPslTable)
             {
             // Well, it's not PSL but it's the track table:
             struct sqlConnection *conn = hAllocConn(db);
-            *retPslTable = hFindLatestGencodeTableConn(conn, "Basic");
+            *retPslTable = hFindLatestGencodeTableConn(conn, "Comp");
             hFreeConn(&conn);
             }
         }
     }
 else
     {
     char *pslTable = pslTableForAcc(db, acc);
     if (pslTable && hTableExists(db, pslTable))
         {
         if (hgvs->type == hgvstCoding)
             getCds(db, acc, cds);
         txAli = pslForQName(db, pslTable, acc);
         }
     // As of 9/26/16, ncbiRefSeqPsl is missing some items (#13673#note-443) -- so fall back
     // on UCSC alignments.