File Changes for hiram

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v363_preview to v363_preview2 (2018-03-12 to 2018-03-19) v363

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src/hg/htdocs/images/Castor_canadensis.jpg
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  b19e1aa670446a3f5e33e86b28251f0f232b1051 Fri Mar 16 15:07:48 2018 -0700
  photo from Colin Knowles, flickr refs #21116
src/hg/makeDb/doc/casCan1/initialBuild.txt
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  8345d6fd09956174344d777fc32c3d1cb251cbc3 Sat Mar 17 16:21:06 2018 -0700
  running up repeat masker, trying new version refs #21116
src/hg/makeDb/genbank/etc/align.dbs
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  42affb99027a59b46497e56640af8c5f575b50b2 Mon Mar 12 14:28:14 2018 -0700
  adding felCat9 to the update alignments refs #21043
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  0231207f092bfd75637b84345f914a51edf35463 Tue Mar 13 10:24:42 2018 -0700
  adding thaSir1 to the update alignments refs #16028
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  9ed002e372d24c0b841043e05114b69fb17e1bbe Mon Mar 19 10:04:49 2018 -0700
  Added casCan1/Castor canadensis/American beaver; refs #21116
src/hg/makeDb/genbank/etc/genbank.conf
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  833ef635c5d7fe764c01f9ce03ce04e25450dbb1 Tue Mar 13 10:23:28 2018 -0700
  adding thaSir1 - Thamnophis sirtalis/Garter snake refs #16028
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  9ed002e372d24c0b841043e05114b69fb17e1bbe Mon Mar 19 10:04:49 2018 -0700
  Added casCan1/Castor canadensis/American beaver; refs #21116
src/hg/makeDb/genbank/etc/hgwdev.dbs
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  42affb99027a59b46497e56640af8c5f575b50b2 Mon Mar 12 14:28:14 2018 -0700
  adding felCat9 to the update alignments refs #21043
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  0231207f092bfd75637b84345f914a51edf35463 Tue Mar 13 10:24:42 2018 -0700
  adding thaSir1 to the update alignments refs #16028
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  9ed002e372d24c0b841043e05114b69fb17e1bbe Mon Mar 19 10:04:49 2018 -0700
  Added casCan1/Castor canadensis/American beaver; refs #21116
src/hg/makeDb/genbank/src/lib/gbGenome.c
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  145ad3e0fbd252c057325523aaa4e79a45125d85 Tue Mar 13 09:35:09 2018 -0700
  Added thaSir1/Thamnophis sirtalis/Garter snake; refs #16028
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  9ed002e372d24c0b841043e05114b69fb17e1bbe Mon Mar 19 10:04:49 2018 -0700
  Added casCan1/Castor canadensis/American beaver; refs #21116
src/hg/makeDb/schema/all.joiner
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  50d47c0d1ffc7585bcb00d91561bff75c1196d27 Tue Mar 13 14:28:11 2018 -0700
  adding neoSch1 exclude to ensemblTranscriptId refs #19883
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  a605723b58bb8ffd7d8266266fc8cb90fe02df15 Tue Mar 13 14:32:25 2018 -0700
  adding rules for felCat9 refs #21043
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  3dda4a265fb7dab115555d35d972884709ad0737 Wed Mar 14 13:40:31 2018 -0700
  add rules for thaSir1 refs #16028
src/hg/makeDb/trackDb/cat/felCat9/trackDb.ra
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  9b2f4235d4cea9e6564db21391acf742ba77dd2a Thu Mar 15 11:09:26 2018 -0700
  using NCBI RefSeq composite refs #21043 #16028
src/hg/makeDb/trackDb/human/chainNetPlacental.ra
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  1e412cddaaa2b51940c0d061c16525c717fa3a76 Wed Mar 14 14:22:28 2018 -0700
  adding felCat9 chainNet refs #21043
src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
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  d5bf3fd17e8249fc1ac8f859ac4f78ac263a7072 Fri Mar 16 11:04:36 2018 -0700
  adding petMar3 and thaSir1 definitions refs #20819 #16028
src/hg/makeDb/trackDb/makefile
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  e22c7873bd6ed887c64d91410d58d7940aaf0b20 Sat Mar 17 16:04:02 2018 -0700
  adding casCan1 to the build refs #21116
src/hg/makeDb/trackDb/mammal/casCan1/description.html
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  e22c7873bd6ed887c64d91410d58d7940aaf0b20 Sat Mar 17 16:04:02 2018 -0700
  adding casCan1 to the build refs #21116
src/hg/makeDb/trackDb/mammal/casCan1/gap.html
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  e22c7873bd6ed887c64d91410d58d7940aaf0b20 Sat Mar 17 16:04:02 2018 -0700
  adding casCan1 to the build refs #21116
src/hg/makeDb/trackDb/mammal/casCan1/gold.html
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  e22c7873bd6ed887c64d91410d58d7940aaf0b20 Sat Mar 17 16:04:02 2018 -0700
  adding casCan1 to the build refs #21116
src/hg/makeDb/trackDb/mammal/casCan1/trackDb.ra
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  e22c7873bd6ed887c64d91410d58d7940aaf0b20 Sat Mar 17 16:04:02 2018 -0700
  adding casCan1 to the build refs #21116
src/hg/makeDb/trackDb/reptiles/thaSir1/gap.html
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  cdf91c81db9caed7ed685f0cfdd8fa1bb2eb6d38 Mon Mar 12 11:37:14 2018 -0700
  updated with refseq release refs #16028;
src/hg/makeDb/trackDb/reptiles/thaSir1/gold.html
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  cdf91c81db9caed7ed685f0cfdd8fa1bb2eb6d38 Mon Mar 12 11:37:14 2018 -0700
  updated with refseq release refs #16028;
src/hg/makeDb/trackDb/reptiles/thaSir1/trackDb.ra
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  ca878b30bf9a36fbce8c84a6f152304ed1a6ce06 Mon Mar 12 12:14:15 2018 -0700
  add gold table assembly track search rule refs #16028
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  9b2f4235d4cea9e6564db21391acf742ba77dd2a Thu Mar 15 11:09:26 2018 -0700
  using NCBI RefSeq composite refs #21043 #16028
src/hg/makeDb/trackDb/trackDb.chainNet.ra
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  1e412cddaaa2b51940c0d061c16525c717fa3a76 Wed Mar 14 14:22:28 2018 -0700
  adding felCat9 chainNet refs #21043
src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra
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  2e7ad11191e60b2322245f490687a533c28b3922 Wed Mar 14 13:57:54 2018 -0700
  adding thaSir1 chainNet refs #16028
src/hg/utils/automation/doGapOverlap.pl
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  1e89a2d72b3c0465f0142798bc9c8fa32395bb94 Mon Mar 12 12:02:30 2018 -0700
  adding an endSize argument refs #16028
src/hg/utils/automation/doNcbiRefSeq.pl
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  ec41c945d901177092a81b1a7fbd8b51aa789685 Mon Mar 12 11:45:32 2018 -0700
  add the warnOnly option refs #20215
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  a7a1e38478582671487e3e3da3a3994a6c85d0fa Mon Mar 12 18:33:57 2018 -0700
  add Angie.s pslFixCdsJoinGap to the fake.psl construction refs #21048
src/hg/utils/automation/nBedToEnds.pl
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  bdf12f0280bcc80caaef1b11084d7990f9c4f939 Mon Mar 12 12:02:53 2018 -0700
  adding an endSize argument refs #16028
src/hg/utils/automation/verifyBrowser.pl
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  b2deb4896d7748bc6103f63049a3b108078f8aea Thu Mar 15 16:31:43 2018 -0700
  checking browser for required tables to completion no redmine
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  ff73ff3e67ccd5bf94ca8d9993ba945aa584cdb2 Fri Mar 16 08:32:57 2018 -0700
  work in progress no redmine
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  c810fea4c95e63f3e88c9d42c2c6336445108f42 Fri Mar 16 10:56:25 2018 -0700
  tool to verify tables present in a completed browser build no redmine
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  0e907c765b761a338cf93f63419790e4311f1434 Fri Mar 16 11:25:09 2018 -0700
  avoid chain/net self no redmine
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  0e44733bd33b3ed5ed905e114d2027f9259b5f7a Mon Mar 19 10:08:19 2018 -0700
  expand optional list to include Ensembl gene tables no redmine
src/hg/utils/phyloTrees/219.nh
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  e5a07ad4b344498ffcfe31363420979b3a5f2692 Mon Mar 19 09:53:15 2018 -0700
  adding casCan1 beaver taxId 51338 refs #21116
src/utils/qa/weeklybld/buildEnv.csh
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  d0a925fb48864a96943414f9014e3199ee2d74e1 Mon Mar 19 10:11:40 2018 -0700
  v363 preview2 refs #21106
src/utils/qa/weeklybld/buildHgCentralSql.csh
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  1def790bb3c8df0ac48cf465da1ccec2874fcd17 Tue Mar 13 19:52:52 2018 -0700
  adding genome-euro to the push commands for hgdownload pushes refs #20999
src/utils/qa/weeklybld/doZip.csh
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  1def790bb3c8df0ac48cf465da1ccec2874fcd17 Tue Mar 13 19:52:52 2018 -0700
  adding genome-euro to the push commands for hgdownload pushes refs #20999
src/utils/qa/weeklybld/makeUserApps.csh
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  1def790bb3c8df0ac48cf465da1ccec2874fcd17 Tue Mar 13 19:52:52 2018 -0700
  adding genome-euro to the push commands for hgdownload pushes refs #20999
src/utils/qa/weeklybld/userApps.sh
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  1def790bb3c8df0ac48cf465da1ccec2874fcd17 Tue Mar 13 19:52:52 2018 -0700
  adding genome-euro to the push commands for hgdownload pushes refs #20999

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