Commits for hiram

v363_base to v364_preview (2018-03-26 to 2018-04-02) v364

6591cc19941330f314782433e25071fded0b383b Mon Mar 26 11:00:22 2018 -0700

• correct blatServers entry refs #21043
  • src/hg/makeDb/doc/felCat9/initialBuild.txt - lines changed 1, context: html, text, full: html, text

2353159ee4baa6788e8ede16c922e7d1cd602fe2 Mon Mar 26 11:14:36 2018 -0700

• adding ponAbe3/cat refs #20980
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text

43d1da85314892351163cdbdc455f6b755f9d0f0 Mon Mar 26 14:39:00 2018 -0700

• add gold/assembly search rule refs #20980
  • src/hg/makeDb/trackDb/orangutan/ponAbe3/trackDb.ra - lines changed 5, context: html, text, full: html, text

c298bdb9715ab130b1f3b10de2aca3adda0dbd36 Tue Mar 27 10:36:15 2018 -0700

• completed hg38 and mm10 lastz/chainNet refs #20980
  • src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 86, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 80, context: html, text, full: html, text
  • src/hg/makeDb/doc/ponAbe3/initialBuild.txt - lines changed 284, context: html, text, full: html, text

0825d62a08f82ef33359842880e9424d4ab11ec4 Thu Mar 29 10:50:46 2018 -0700

• eliminate refGene overrides refs #20215
  • src/hg/makeDb/trackDb/drosophila/trackDb.ra - lines changed 4, context: html, text, full: html, text

06f60068a0de355358219ac069df1195add93ccb Thu Mar 29 12:54:31 2018 -0700

• clean up path names in blastz-run-ucsc and add noHost option for dbHost argument refs #18874
  • src/hg/utils/automation/HgAutomate.pm - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/blastz-run-ucsc - lines changed 75, context: html, text, full: html, text
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 10, context: html, text, full: html, text

8e89f3fab99781016c94b1d7f149bb3f7b1a4882 Thu Mar 29 14:27:05 2018 -0700

• remove cath email from build scripts no redmine
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview2.csh - lines changed 1, context: html, text, full: html, text

7ef6ca622f7f5f8e8d15cc3e8c0cc40bafb25565 Thu Mar 29 17:17:17 2018 -0700

• cleanup syntenic net when zero result refs #18874
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 20, context: html, text, full: html, text

e67cb260d2dfa553eb01402526eef0fb28b6fbcd Thu Mar 29 18:42:21 2018 -0700

• add skipDownload option and complete load bigBed construction when db does not exist refs #18874
  • src/hg/utils/automation/doRecipBest.pl - lines changed 30, context: html, text, full: html, text

66afcba20d10fa309fa23cb334a1828a7bcfc985 Thu Mar 29 20:49:10 2018 -0700

• better consistent name for the featureBits result refs #18874
  • src/hg/utils/automation/doRecipBest.pl - lines changed 5, context: html, text, full: html, text

0bed3906b7c99c93eca430c70bd4e09340d15e82 Mon Apr 2 09:59:33 2018 -0700

• v364 preview1 refs #21106
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text