3f112eba0af44ffe8b5c15c7721f3e850afe9276 kate Wed Mar 28 15:14:07 2018 -0700 Expand schema to include strand for each endpoint (request by Braney and Daniel Zerbino, to enable future support of rearrangements as well as bedPE). refs #21109 diff --git src/hg/hgc/interactClick.c src/hg/hgc/interactClick.c index 412e81a..7ac27c0 100644 --- src/hg/hgc/interactClick.c +++ src/hg/hgc/interactClick.c @@ -137,46 +137,47 @@ if (!interactUiDirectional(tdb)) { if (interactOtherChrom(inter)) { region1Label = "This"; region2Label = "Other"; } else { region1Label = "Lower"; region2Label = "Upper"; } } +// format and print sprintLongWithCommas(startBuf, region1Start + 1); sprintLongWithCommas(endBuf, region1End); sprintLongWithCommas(sizeBuf, region1End - region1Start); printf("<b>%s region:</b> %s " - "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a>", + "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a> %s", region1Label, region1Name, region1Chrom, region1Start+1, region1End, - region1Chrom, startBuf, endBuf); + region1Chrom, startBuf, endBuf, inter->sourceStrand[0] == '.' ? "" : inter->sourceStrand); printf(" %s bp<br>\n", sizeBuf); sprintLongWithCommas(startBuf, region2Start+1); sprintLongWithCommas(endBuf, region2End); sprintLongWithCommas(sizeBuf, region2End - region2Start); printf("<b>%s region:</b> %s " - "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a>", + "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a> %s", region2Label, region2Name, region2Chrom, region2Start+1, region2End, - region2Chrom, startBuf, endBuf); + region2Chrom, startBuf, endBuf, inter->targetStrand[0] == '.' ? "" : inter->targetStrand); printf(" %s bp<br>\n", sizeBuf); int distance = interactRegionDistance(inter); if (distance > 0) { // same chrom sprintLongWithCommas(sizeBuf, distance); printf("<b>Distance between midpoints:</b> %s bp<br>\n", sizeBuf); } #ifdef TODO /* TODO: get count and score stats of all interactions in window ?*/ double *scores; AllocArray(scores, count); #endif }